Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   G5S31_RS03080 Genome accession   NZ_CP049090
Coordinates   604435..604965 (+) Length   176 a.a.
NCBI ID   WP_021119496.1    Uniprot ID   -
Organism   Glaesserella parasuis strain aHPS7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 599435..609965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S31_RS03060 (G5S31_03060) aroK 599804..600325 (-) 522 WP_015940157.1 shikimate kinase AroK -
  G5S31_RS03065 (G5S31_03065) - 600555..603110 (-) 2556 WP_164689396.1 penicillin-binding protein 1A -
  G5S31_RS03070 (G5S31_03070) comA 603264..603941 (+) 678 WP_160404859.1 competence protein ComA Machinery gene
  G5S31_RS03075 (G5S31_03075) comB 603917..604438 (+) 522 WP_160404857.1 hypothetical protein Machinery gene
  G5S31_RS03080 (G5S31_03080) comC 604435..604965 (+) 531 WP_021119496.1 hypothetical protein Machinery gene
  G5S31_RS03085 (G5S31_03085) comD 605010..605351 (+) 342 WP_021114623.1 pilus assembly, PilP family protein Machinery gene
  G5S31_RS03090 (G5S31_03090) comE 605361..606623 (+) 1263 WP_160404856.1 type IV pilus secretin PilQ Machinery gene
  G5S31_RS03095 (G5S31_03095) nusB 606702..607115 (+) 414 WP_160404854.1 transcription antitermination factor NusB -
  G5S31_RS03100 (G5S31_03100) thiL 607124..608092 (+) 969 WP_160404852.1 thiamine-phosphate kinase -
  G5S31_RS03105 (G5S31_03105) - 608095..608565 (+) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  G5S31_RS03110 (G5S31_03110) - 608567..609196 (+) 630 WP_160404850.1 LysE family transporter -
  G5S31_RS03115 (G5S31_03115) trxA 609493..609807 (+) 315 WP_015940165.1 thioredoxin -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 20850.32 Da        Isoelectric Point: 9.9672

>NTDB_id=424670 G5S31_RS03080 WP_021119496.1 604435..604965(+) (comC) [Glaesserella parasuis strain aHPS7]
MKLSLAKYYLMPQHPLYRGLYYLNQNKIFILSGIFLLIMAFPIGNYLYLNQQIAQQQKQLTEFKQINEHKQQQLKLLQQR
YQLAQDKSELLTQINQQIQKILDKNSVEIDSIQWNMEERKIYLLISQSTQKVLNVIADLNQLTTVKFQEIHLTKKTKQKH
IQLNATLLFQADTGEP

Nucleotide


Download         Length: 531 bp        

>NTDB_id=424670 G5S31_RS03080 WP_021119496.1 604435..604965(+) (comC) [Glaesserella parasuis strain aHPS7]
ATGAAATTGTCCTTAGCGAAGTATTATTTAATGCCACAACATCCATTATATCGTGGTTTATATTATTTAAACCAAAATAA
AATATTTATTCTATCGGGAATATTTTTGTTAATTATGGCATTTCCAATAGGGAATTATCTTTATCTTAATCAGCAAATAG
CTCAACAACAAAAACAGCTCACTGAATTTAAACAGATTAACGAACATAAACAGCAACAATTAAAATTATTACAACAACGT
TATCAACTTGCTCAAGATAAAAGTGAATTATTAACCCAAATAAATCAACAAATTCAAAAAATCTTGGATAAAAACAGCGT
AGAAATTGACAGTATTCAATGGAATATGGAAGAAAGAAAAATCTATTTATTAATCAGCCAATCTACGCAAAAGGTACTTA
ATGTGATTGCTGATCTTAATCAATTAACCACGGTTAAATTTCAGGAAATCCATTTAACTAAAAAAACAAAACAGAAACAT
ATTCAACTCAATGCCACTTTACTTTTTCAAGCTGACACAGGAGAACCCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Glaesserella parasuis strain SC1401

100

100

1