Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   G5S31_RS03085 Genome accession   NZ_CP049090
Coordinates   605010..605351 (+) Length   113 a.a.
NCBI ID   WP_021114623.1    Uniprot ID   -
Organism   Glaesserella parasuis strain aHPS7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 600010..610351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S31_RS03065 (G5S31_03065) - 600555..603110 (-) 2556 WP_164689396.1 penicillin-binding protein 1A -
  G5S31_RS03070 (G5S31_03070) comA 603264..603941 (+) 678 WP_160404859.1 competence protein ComA Machinery gene
  G5S31_RS03075 (G5S31_03075) comB 603917..604438 (+) 522 WP_160404857.1 hypothetical protein Machinery gene
  G5S31_RS03080 (G5S31_03080) comC 604435..604965 (+) 531 WP_021119496.1 hypothetical protein Machinery gene
  G5S31_RS03085 (G5S31_03085) comD 605010..605351 (+) 342 WP_021114623.1 pilus assembly, PilP family protein Machinery gene
  G5S31_RS03090 (G5S31_03090) comE 605361..606623 (+) 1263 WP_160404856.1 type IV pilus secretin PilQ Machinery gene
  G5S31_RS03095 (G5S31_03095) nusB 606702..607115 (+) 414 WP_160404854.1 transcription antitermination factor NusB -
  G5S31_RS03100 (G5S31_03100) thiL 607124..608092 (+) 969 WP_160404852.1 thiamine-phosphate kinase -
  G5S31_RS03105 (G5S31_03105) - 608095..608565 (+) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  G5S31_RS03110 (G5S31_03110) - 608567..609196 (+) 630 WP_160404850.1 LysE family transporter -
  G5S31_RS03115 (G5S31_03115) trxA 609493..609807 (+) 315 WP_015940165.1 thioredoxin -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 13165.91 Da        Isoelectric Point: 4.8436

>NTDB_id=424671 G5S31_RS03085 WP_021114623.1 605010..605351(+) (comD) [Glaesserella parasuis strain aHPS7]
MADPFYAKDNAQDQPHTAKDQNKTTACMPTDKVNEINLTTDFDKLQLIGIIQIDDKIRAIFLDDKKQLIDLYPDDYLSHS
FIQIKEINFKSVSYIDWQKTENCQSPKLFTSKF

Nucleotide


Download         Length: 342 bp        

>NTDB_id=424671 G5S31_RS03085 WP_021114623.1 605010..605351(+) (comD) [Glaesserella parasuis strain aHPS7]
ATGGCAGATCCTTTTTATGCTAAGGATAACGCCCAAGATCAGCCACACACGGCAAAAGATCAAAACAAAACGACCGCTTG
TATGCCAACGGACAAGGTGAATGAAATTAATCTCACCACAGATTTTGATAAATTACAGCTTATCGGCATTATTCAGATCG
ATGATAAAATCCGAGCCATTTTTTTAGATGATAAAAAACAGCTTATAGATTTATACCCTGACGACTATTTAAGCCATTCC
TTTATTCAAATTAAAGAAATTAATTTTAAATCTGTTAGTTATATTGATTGGCAAAAAACAGAAAATTGCCAATCTCCTAA
ATTGTTTACTTCAAAATTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Glaesserella parasuis strain SC1401

98.23

100

0.982