Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   G5C59_RS10680 Genome accession   NZ_CP049088
Coordinates   2153443..2153784 (-) Length   113 a.a.
NCBI ID   WP_010786294.1    Uniprot ID   -
Organism   Glaesserella parasuis strain sHPS7     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2148443..2158784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS10645 (G5C59_10600) lpxH 2148742..2149470 (-) 729 WP_010786290.1 UDP-2,3-diacylglucosamine diphosphatase -
  G5C59_RS10650 (G5C59_10605) - 2149584..2150111 (-) 528 WP_005714677.1 DUF1523 family protein -
  G5C59_RS10655 (G5C59_10610) - 2150149..2150931 (-) 783 WP_010786292.1 TatD family hydrolase -
  G5C59_RS10660 (G5C59_10615) - 2150945..2151442 (-) 498 WP_005714675.1 GNAT family N-acetyltransferase -
  G5C59_RS10665 (G5C59_10620) - 2151443..2151721 (-) 279 WP_005714674.1 DUF1778 domain-containing protein -
  G5C59_RS10670 (G5C59_10625) epmA 2151774..2152754 (-) 981 WP_043896435.1 elongation factor P--(R)-beta-lysine ligase -
  G5C59_RS10675 (G5C59_10630) - 2152895..2153343 (+) 449 Protein_2083 IS5 family transposase -
  G5C59_RS10680 (G5C59_10635) comEA/comE1 2153443..2153784 (-) 342 WP_010786294.1 ComEA family DNA-binding protein Machinery gene
  G5C59_RS10685 (G5C59_10640) - 2154042..2155307 (+) 1266 WP_021118397.1 LysM-like peptidoglycan-binding domain-containing protein -
  G5C59_RS10690 (G5C59_10645) - 2155499..2155765 (+) 267 WP_234701705.1 MliC family protein -
  G5C59_RS10695 (G5C59_10650) waaF 2155774..2156856 (+) 1083 WP_021118396.1 lipopolysaccharide heptosyltransferase II -
  G5C59_RS10700 (G5C59_10655) - 2156916..2157503 (+) 588 WP_021111029.1 FMN-dependent NADH-azoreductase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12407.27 Da        Isoelectric Point: 9.8972

>NTDB_id=424636 G5C59_RS10680 WP_010786294.1 2153443..2153784(-) (comEA/comE1) [Glaesserella parasuis strain sHPS7]
MKKLSRYTFSLLFGLFSATTFAEEKVTTSTEPTPVVMQQVAATQKVNANVVNINTATASEIQDKLVGIGAKKAQAIVEYR
EKNGKFLNVEQLTEVSGIGKATLEKNRDRIVIE

Nucleotide


Download         Length: 342 bp        

>NTDB_id=424636 G5C59_RS10680 WP_010786294.1 2153443..2153784(-) (comEA/comE1) [Glaesserella parasuis strain sHPS7]
ATGAAAAAACTTTCTCGTTACACATTCAGTCTTTTATTTGGGCTTTTCTCTGCAACAACATTTGCTGAAGAAAAAGTAAC
TACGTCAACAGAACCTACACCAGTAGTGATGCAACAAGTCGCAGCGACACAAAAAGTAAATGCGAATGTTGTAAATATCA
ATACTGCGACAGCCTCAGAAATCCAAGATAAGTTAGTAGGTATTGGAGCGAAAAAGGCTCAGGCAATTGTGGAATATCGT
GAGAAAAACGGTAAGTTTTTAAATGTTGAGCAGCTCACCGAAGTTTCAGGTATCGGGAAAGCGACACTTGAAAAAAACCG
AGATCGTATTGTGATTGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

98.23

100

0.982
  comE1/comEA Haemophilus influenzae Rd KW20

59.13

100

0.602