Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   G5C59_RS05805 Genome accession   NZ_CP049088
Coordinates   1198024..1198605 (+) Length   193 a.a.
NCBI ID   WP_164681651.1    Uniprot ID   -
Organism   Glaesserella parasuis strain sHPS7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1193024..1203605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS05750 (G5C59_05725) gltX 1193250..1194689 (-) 1440 WP_043895984.1 glutamate--tRNA ligase -
  G5C59_RS05790 (G5C59_05765) - 1195913..1196251 (+) 339 WP_164681650.1 type II toxin-antitoxin system RelE/ParE family toxin -
  G5C59_RS05795 (G5C59_05770) - 1196255..1196563 (+) 309 WP_005710405.1 helix-turn-helix domain-containing protein -
  G5C59_RS05800 (G5C59_05775) - 1196764..1197924 (+) 1161 WP_160441069.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  G5C59_RS05805 (G5C59_05780) pilF 1198024..1198605 (+) 582 WP_164681651.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  G5C59_RS05810 (G5C59_05785) - 1198666..1199601 (+) 936 WP_005710401.1 KpsF/GutQ family sugar-phosphate isomerase -
  G5C59_RS05815 (G5C59_05790) greB 1199601..1200089 (+) 489 WP_005710400.1 transcription elongation factor GreB -
  G5C59_RS05835 (G5C59_05810) - 1200617..1201915 (+) 1299 WP_021118667.1 NAD(P)/FAD-dependent oxidoreductase -
  G5C59_RS05840 (G5C59_05815) - 1202002..1202535 (-) 534 WP_010786060.1 TIGR00645 family protein -
  G5C59_RS05845 (G5C59_05820) - 1202624..1203262 (-) 639 WP_005710397.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22267.18 Da        Isoelectric Point: 8.4234

>NTDB_id=424627 G5C59_RS05805 WP_164681651.1 1198024..1198605(+) (pilF) [Glaesserella parasuis strain sHPS7]
MTFAKFFRNLTACSVALWLVACANQTTQVDFNRSEAVKARINLALAYLEQSDFPKAKENIDKALEHDVKDYLPHSVLAYY
YQQTGDNQKAEEAYQQALKLSKTQSKNNQVRPDVLNNYGTFLCKQKQFDKAYQQFETALTSQGAYYNQADTLENIALCAN
MKKDIEKQKTALSQLEKIDKSRAERLYNFMEIR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=424627 G5C59_RS05805 WP_164681651.1 1198024..1198605(+) (pilF) [Glaesserella parasuis strain sHPS7]
ATGACCTTTGCAAAATTTTTCCGTAATTTGACCGCTTGTAGCGTGGCATTATGGCTTGTTGCTTGTGCGAACCAAACTAC
TCAGGTGGATTTTAACCGCTCGGAAGCCGTCAAAGCTCGCATTAATTTGGCCCTTGCTTACCTTGAACAATCTGATTTTC
CAAAAGCGAAAGAGAACATTGACAAAGCGCTTGAACACGATGTAAAAGACTACCTACCGCACTCTGTGCTTGCCTATTAT
TACCAACAAACTGGCGATAACCAAAAAGCAGAAGAAGCCTACCAGCAAGCCTTGAAGTTAAGTAAAACACAGAGCAAAAA
CAATCAAGTTCGCCCTGATGTATTGAATAACTACGGTACCTTTCTGTGCAAACAAAAACAGTTCGACAAAGCCTATCAGC
AATTTGAAACGGCATTAACCAGTCAAGGAGCCTATTACAATCAAGCAGATACACTAGAAAATATCGCCTTATGTGCCAAT
ATGAAGAAGGATATTGAGAAGCAAAAAACAGCACTATCTCAACTTGAGAAAATAGATAAATCAAGAGCAGAACGACTATA
TAATTTCATGGAGATTAGATAG

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_2)

(74-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Glaesserella parasuis strain SC1401

98.964

100

0.99
  pilF/pilF2 Haemophilus influenzae Rd KW20

44.693

92.746

0.415