Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ST64987_RS02225 Genome accession   NZ_CP049053
Coordinates   400444..400887 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST64987     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 395444..405887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST64987_RS02205 (ST64987_0392) - 395967..396719 (-) 753 WP_011680801.1 NUDIX hydrolase -
  ST64987_RS02210 (ST64987_0393) - 396783..397888 (-) 1106 Protein_367 AAA family ATPase -
  ST64987_RS02215 (ST64987_0395) gdhA 398232..399584 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  ST64987_RS02220 (ST64987_0396) - 399843..400253 (+) 411 WP_011680804.1 peptide deformylase -
  ST64987_RS02225 (ST64987_0397) rcrR 400444..400887 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ST64987_RS02230 (ST64987_0398) rcrP 400891..402705 (+) 1815 WP_167401430.1 ABC transporter ATP-binding protein Regulator
  ST64987_RS02235 (ST64987_0399) rcrQ 402695..404473 (+) 1779 WP_167401431.1 ABC transporter ATP-binding protein Regulator
  ST64987_RS02240 (ST64987_0400) - 404629..405000 (+) 372 WP_228024347.1 GNAT family acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=424464 ST64987_RS02225 WP_002945408.1 400444..400887(+) (rcrR) [Streptococcus thermophilus strain ST64987]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=424464 ST64987_RS02225 WP_002945408.1 400444..400887(+) (rcrR) [Streptococcus thermophilus strain ST64987]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537