Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ST64987_RS02235 Genome accession   NZ_CP049053
Coordinates   402695..404473 (+) Length   592 a.a.
NCBI ID   WP_167401431.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST64987     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 397695..409473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST64987_RS02215 (ST64987_0395) gdhA 398232..399584 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  ST64987_RS02220 (ST64987_0396) - 399843..400253 (+) 411 WP_011680804.1 peptide deformylase -
  ST64987_RS02225 (ST64987_0397) rcrR 400444..400887 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ST64987_RS02230 (ST64987_0398) rcrP 400891..402705 (+) 1815 WP_167401430.1 ABC transporter ATP-binding protein Regulator
  ST64987_RS02235 (ST64987_0399) rcrQ 402695..404473 (+) 1779 WP_167401431.1 ABC transporter ATP-binding protein Regulator
  ST64987_RS02240 (ST64987_0400) - 404629..405000 (+) 372 WP_228024347.1 GNAT family acetyltransferase -
  ST64987_RS10530 - 405023..406186 (+) 1164 Protein_374 sensor histidine kinase -
  ST64987_RS02250 (ST64987_0402) pyrH 406422..407159 (+) 738 WP_002949867.1 UMP kinase -
  ST64987_RS02255 (ST64987_0403) frr 407174..407731 (+) 558 WP_002949868.1 ribosome recycling factor -
  ST64987_RS02260 (ST64987_0404) cvfB 407822..408679 (+) 858 WP_014608029.1 RNA-binding virulence regulatory protein CvfB -
  ST64987_RS02265 (ST64987_0405) - 408688..408903 (+) 216 WP_002944188.1 YozE family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65171.35 Da        Isoelectric Point: 5.2200

>NTDB_id=424466 ST64987_RS02235 WP_167401431.1 402695..404473(+) (rcrQ) [Streptococcus thermophilus strain ST64987]
MENKPKTSSYKRLKPYIKGFQVPFVLAIVGAIISAVITVIGPDKLKEITNLITDGITPIKMGVIPGIDLDKVGSIALTLA
VLYAISAIVGYLQSFTVVTITQRFSQRFRTAIQKKINTVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASKESSQDFKG
LNDKLYKLMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDKGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAANGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=424466 ST64987_RS02235 WP_167401431.1 402695..404473(+) (rcrQ) [Streptococcus thermophilus strain ST64987]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGTTTAAAACCCTATATTAAAGGTTTCCAAGTTCCCTTTGTCCTTGC
GATTGTTGGAGCCATTATTTCAGCAGTTATAACTGTTATTGGACCTGATAAATTAAAAGAAATCACCAATCTTATTACAG
ATGGGATTACGCCAATTAAGATGGGGGTTATTCCGGGCATCGATTTAGACAAGGTGGGCAGCATTGCTTTAACCTTGGCT
GTTTTATATGCCATTTCAGCCATTGTTGGTTACTTACAAAGTTTTACCGTTGTAACAATTACGCAACGATTTTCACAACG
TTTCCGTACAGCAATCCAAAAGAAAATCAACACCGTACCTCTTAATTATTTTGATAGTCATTCTCAAGGAGACACACTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAGGGTCTGGGTACTCTAATTACTTCAAGCGTTCTC
TTGGTAGCAGCCATTATTATGATGTTCTACTCAAATGTTACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTTATCATGGGCTTCTCGCAACCACTTTTTAAACGCCAACAAGAAAATTTGGCTAACATTAATGGGT
ACATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGCTACAATGCATCTAAAGAAAGCAGTCAAGATTTCAAGGGG
CTTAATGATAAACTCTATAAATTGATGTGGCAATCACAATTTATCTCAGGTATTATGATGCCACTCATGATTTTCATTGG
GAATTTTGGTTACGTCATGGTCTGTCTTGTGGGTGCCATCAAGGTTATTGATGGTAGCTTGACTATTGGTGATGTTGTAG
CCTTCATGACCTATGTTCGCATCTTCTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCAACT
GCAGCTATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACAGCTGAATTGACAGA
TACTAAAGGCCAAGTTGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGATTTTTCAGCTC
TTGCTAAGCCAGGACAAAAGATTGCTATTGTTGGTCCGACGGGTGCTGGTAAGACGACTATTGTTAACTTGCTTATGAAG
TTTTATAATATCGATAAAGGCCGTATCACCATTGACGGTGTGGATACGAACGACATGAAACGTGAAACCGTTCATGATCA
ATTCTCTATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGACGAGCAAGTTATTGCTGCAGCCAAGGCTGTCGGTGTTCACCACTTCATTACCACACTTCCAAAGGGTTATGATACT
TATTTGGATGATTCTGTGACCTTATCAGTTGGTCAGAAACAGCTCTTGACCATTGCGCGTGCGCTTCTTAAGGATGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCAGTTGACACCCGAACAGAAGAATTGATTCAGAAGGCTATGGACAAGCTTA
TGGAGGGTCGTACATCCTTTGTCATTGCCCACCGCTTATCAACCATTCGAAATGCGGACCTCATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGAAATCATGATGAGCTCATGGCAGCAAATGGATTCTATGCTGATCTTTATAATAGTCAGTT
TACGGAAGAAGTGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(371-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

69.088

100

0.691