Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ATY02_RS34450 Genome accession   NZ_CP049045
Coordinates   7407849..7408253 (-) Length   134 a.a.
NCBI ID   WP_068576676.1    Uniprot ID   -
Organism   Pseudomonas sp. BIOMIG1BAC     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 7402849..7413253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY02_RS34435 (ATY02_34310) - 7404682..7406745 (-) 2064 WP_068576679.1 methyl-accepting chemotaxis protein -
  ATY02_RS34440 (ATY02_34315) - 7406876..7407415 (-) 540 WP_068576678.1 chemotaxis protein CheW -
  ATY02_RS34445 (ATY02_34320) pilH 7407426..7407791 (-) 366 WP_068576792.1 twitching motility response regulator PilH -
  ATY02_RS34450 (ATY02_34325) pilG 7407849..7408253 (-) 405 WP_068576676.1 twitching motility response regulator PilG Regulator
  ATY02_RS34455 (ATY02_34330) gshB 7408492..7409463 (+) 972 WP_068576674.1 glutathione synthase -
  ATY02_RS34460 (ATY02_34335) - 7409593..7410492 (+) 900 WP_068576672.1 energy transducer TonB -
  ATY02_RS34465 (ATY02_34340) - 7410655..7411224 (+) 570 WP_068576670.1 YqgE/AlgH family protein -
  ATY02_RS34470 (ATY02_34345) ruvX 7411224..7411661 (+) 438 WP_068576668.1 Holliday junction resolvase RuvX -
  ATY02_RS34475 (ATY02_34350) pyrR 7411922..7412428 (+) 507 WP_068576667.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14749.20 Da        Isoelectric Point: 7.2445

>NTDB_id=424409 ATY02_RS34450 WP_068576676.1 7407849..7408253(-) (pilG) [Pseudomonas sp. BIOMIG1BAC]
MEQQSNALKVMVIDDSKTIRRTAEMLLKNVGCEVITAVDGFEALAKIVDHHPGIIFVDIMMPRLDGYQTCALVKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIRAHVPDFVAQAPQ

Nucleotide


Download         Length: 405 bp        

>NTDB_id=424409 ATY02_RS34450 WP_068576676.1 7407849..7408253(-) (pilG) [Pseudomonas sp. BIOMIG1BAC]
ATGGAACAGCAATCCAACGCCTTGAAGGTCATGGTGATCGACGATTCGAAGACGATTCGTCGGACTGCCGAAATGCTGTT
GAAGAACGTCGGTTGCGAAGTCATTACCGCAGTCGATGGGTTCGAGGCCCTGGCAAAGATCGTCGACCATCACCCCGGCA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGACGGCTATCAGACCTGTGCGCTGGTCAAGAACAACAGCGCGTTCAAG
TCCACTCCAGTGATCATGCTGTCCTCCAAGGACGGGCTGTTCGACAAGGCCAAGGGGCGTATCGTCGGTTCCGACCAGTT
TCTGACCAAACCCTTCAGCAAGGAAGAACTGCTGAGCGCGATCAGGGCCCATGTCCCGGATTTCGTCGCGCAGGCGCCAC
AGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.2

93.284

0.701
  vicR Streptococcus mutans UA159

42.735

87.313

0.373