Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ATY02_RS31285 Genome accession   NZ_CP049045
Coordinates   6733517..6734734 (+) Length   405 a.a.
NCBI ID   WP_068575526.1    Uniprot ID   A0A6G7A7B7
Organism   Pseudomonas sp. BIOMIG1BAC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6728517..6739734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY02_RS31270 (ATY02_31150) - 6729134..6732052 (+) 2919 WP_068575523.1 DUF748 domain-containing protein -
  ATY02_RS31275 (ATY02_31155) - 6732253..6732609 (-) 357 WP_068575524.1 BON domain-containing protein -
  ATY02_RS31280 (ATY02_31160) - 6732826..6733242 (-) 417 WP_068575525.1 pilin -
  ATY02_RS31285 (ATY02_31165) pilC 6733517..6734734 (+) 1218 WP_068575526.1 type II secretion system F family protein Machinery gene
  ATY02_RS31290 (ATY02_31170) pilD 6734737..6735609 (+) 873 WP_068575527.1 prepilin peptidase Machinery gene
  ATY02_RS31295 (ATY02_31175) coaE 6735606..6736229 (+) 624 WP_068575528.1 dephospho-CoA kinase -
  ATY02_RS31300 (ATY02_31180) yacG 6736226..6736429 (+) 204 WP_068575529.1 DNA gyrase inhibitor YacG -
  ATY02_RS31305 (ATY02_31185) - 6736447..6736662 (-) 216 WP_022641062.1 hypothetical protein -
  ATY02_RS31310 (ATY02_31190) - 6736726..6737415 (-) 690 WP_068575530.1 energy-coupling factor ABC transporter permease -
  ATY02_RS31315 (ATY02_31195) - 6737412..6737879 (-) 468 WP_068575531.1 hypothetical protein -
  ATY02_RS31320 (ATY02_31200) - 6738032..6738661 (+) 630 WP_068575532.1 DUF1780 domain-containing protein -
  ATY02_RS31325 (ATY02_31205) - 6738849..6739022 (+) 174 WP_068575533.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43935.59 Da        Isoelectric Point: 10.4679

>NTDB_id=424403 ATY02_RS31285 WP_068575526.1 6733517..6734734(+) (pilC) [Pseudomonas sp. BIOMIG1BAC]
MAVKASRTSVYLWQGTDSRGHVMSGELSAANPALVGARLRKQGIIPTRVRRKPRYGLRLGARVKSRDIALLTRQLATLFQ
AGVPLLQSLEIIADSFGQPLIRQLLGQLKHDIEAGSNLANALRKHPQHFDPLYCNLVEAGEQAGALDTLLERIATYQEKS
ERLKARLKKAMVYPLAVIGVALIVSSILLLKVVPQFQSLFAGFNAELPWLTQKVIGLSYFLQQHGGTSLAACLGLGLGGR
LLYRRSARLRDHLDAGLLRLPLGGALLHKSAVARMARTLATTFAAGVPLVQALESVAGASGNHIHRRAMERIRLQVEGGM
QLNFAMRASGVFPDMAIQMTAIGEESGTLDHLLEKVAAHYETEVDNLVDSLTSLMEPLIMVILGSIVAALVLAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=424403 ATY02_RS31285 WP_068575526.1 6733517..6734734(+) (pilC) [Pseudomonas sp. BIOMIG1BAC]
ATGGCGGTAAAAGCTTCCAGGACCAGCGTGTACCTCTGGCAAGGTACCGATAGCCGGGGTCATGTCATGAGCGGCGAACT
GAGTGCCGCGAACCCGGCCCTGGTTGGGGCTCGCCTACGCAAGCAGGGCATCATCCCAACCAGGGTCCGCCGCAAACCTC
GGTACGGGCTGCGTTTGGGAGCGCGGGTAAAATCACGGGACATCGCTTTGCTCACCCGCCAATTGGCAACGCTGTTCCAG
GCTGGCGTACCGCTGCTGCAGTCCCTGGAAATCATTGCCGATAGCTTCGGCCAACCGTTGATCCGCCAGCTCCTGGGACA
ACTCAAGCACGATATCGAGGCCGGCTCCAACCTGGCCAACGCGCTGCGCAAACACCCACAACACTTCGACCCGTTGTACT
GCAACCTGGTGGAGGCCGGCGAGCAGGCAGGGGCCCTGGATACACTGCTGGAGCGGATCGCCACCTACCAGGAAAAAAGC
GAGCGTCTCAAGGCCCGCCTGAAGAAGGCCATGGTCTACCCCCTGGCAGTGATCGGCGTCGCGCTCATAGTCAGCAGCAT
CCTGCTGCTCAAAGTGGTTCCGCAATTCCAGAGTCTGTTCGCCGGCTTCAATGCCGAACTGCCCTGGCTGACCCAGAAGG
TCATCGGTCTTTCATATTTCCTGCAGCAACACGGTGGAACCTCGCTGGCAGCCTGCCTGGGACTCGGGCTAGGTGGACGC
CTGCTCTATCGTCGTTCTGCACGTCTACGCGATCATCTGGATGCAGGGTTGTTGCGCTTGCCCCTGGGTGGCGCCTTGCT
GCACAAGTCTGCCGTGGCGCGCATGGCCCGTACCCTGGCCACCACCTTCGCTGCGGGAGTCCCCCTGGTTCAAGCCCTGG
AGTCCGTCGCTGGTGCCAGCGGCAACCACATTCATCGACGCGCGATGGAGCGTATCCGCCTCCAGGTCGAAGGTGGCATG
CAACTGAATTTCGCCATGCGTGCCAGCGGTGTTTTCCCTGACATGGCGATCCAGATGACCGCCATCGGTGAAGAATCCGG
AACCCTGGATCATTTATTGGAAAAGGTAGCGGCGCATTATGAAACCGAGGTGGATAACCTGGTGGACAGCCTGACCAGCC
TCATGGAGCCTTTGATCATGGTGATCCTGGGCAGTATCGTCGCAGCCTTGGTACTGGCGATGTACTTGCCCATTTTTCAA
CTCGGTACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7A7B7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.296

100

0.563
  pilC Acinetobacter baylyi ADP1

51.834

100

0.523
  pilC Acinetobacter baumannii D1279779

51.716

100

0.521
  pilC Legionella pneumophila strain ERS1305867

47.355

98.025

0.464
  pilC Vibrio cholerae strain A1552

43.367

96.79

0.42
  pilG Neisseria gonorrhoeae MS11

41.687

99.506

0.415
  pilG Neisseria meningitidis 44/76-A

41.191

99.506

0.41
  pilC Vibrio campbellii strain DS40M4

41.327

96.79

0.4
  pilC Thermus thermophilus HB27

36.75

98.765

0.363