Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IFE20_RS13850 Genome accession   NZ_CP062228
Coordinates   2880347..2881084 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain UTI89     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2875347..2886084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFE20_RS13835 (IFE20_13835) clpC 2875801..2878374 (-) 2574 WP_001350770.1 ATP-dependent chaperone ClpB Regulator
  IFE20_RS13840 (IFE20_13840) yfiH 2878504..2879235 (-) 732 WP_000040118.1 purine nucleoside phosphorylase YfiH -
  IFE20_RS13845 (IFE20_13845) rluD 2879232..2880212 (-) 981 WP_000079114.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IFE20_RS13850 (IFE20_13850) comL 2880347..2881084 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IFE20_RS13855 (IFE20_13855) raiA 2881354..2881695 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IFE20_RS13860 (IFE20_13860) pheL 2881799..2881846 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IFE20_RS13865 (IFE20_13865) pheA 2881945..2883105 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  IFE20_RS13870 (IFE20_13870) tyrA 2883148..2884269 (-) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IFE20_RS13875 (IFE20_13875) aroF 2884280..2885350 (-) 1071 WP_001168026.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IFE20_RS13880 (IFE20_13880) yfiL 2885560..2885925 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=424281 IFE20_RS13850 WP_000197686.1 2880347..2881084(+) (comL) [Escherichia coli strain UTI89]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=424281 IFE20_RS13850 WP_000197686.1 2880347..2881084(+) (comL) [Escherichia coli strain UTI89]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376