Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G5S46_RS10740 Genome accession   NZ_CP048929
Coordinates   2057729..2058148 (-) Length   139 a.a.
NCBI ID   WP_172763054.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT213     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2052729..2063148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S46_RS10705 (G5S46_10540) - 2052947..2053657 (-) 711 WP_373274872.1 opacity family porin -
  G5S46_RS12200 (G5S46_10545) - 2054123..2054631 (-) 509 Protein_2085 pilin -
  G5S46_RS10720 (G5S46_10550) - 2055000..2055143 (-) 144 WP_050303184.1 hypothetical protein -
  G5S46_RS10725 (G5S46_10555) - 2055561..2055964 (-) 404 Protein_2087 pilin -
  G5S46_RS10730 (G5S46_10565) lpxC 2056092..2057015 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  G5S46_RS10740 (G5S46_10570) pilE 2057729..2058148 (-) 420 WP_172763054.1 pilin Machinery gene
  G5S46_RS10745 (G5S46_10575) - 2058244..2058669 (-) 426 Protein_2090 pilin -
  G5S46_RS10750 (G5S46_10580) - 2059196..2059549 (-) 354 Protein_2091 pilin -
  G5S46_RS10755 (G5S46_10585) - 2059590..2059805 (-) 216 Protein_2092 pilin -
  G5S46_RS10760 (G5S46_10590) - 2060177..2060308 (-) 132 WP_012504086.1 hypothetical protein -
  G5S46_RS10765 (G5S46_10595) - 2060390..2061079 (-) 690 WP_050169450.1 SprT family zinc-dependent metalloprotease -
  G5S46_RS10770 (G5S46_10600) - 2061076..2061819 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  G5S46_RS10775 (G5S46_10605) gmhB 2061849..2062412 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15014.70 Da        Isoelectric Point: 6.9546

>NTDB_id=424250 G5S46_RS10740 WP_172763054.1 2057729..2058148(-) (pilE) [Neisseria gonorrhoeae strain CT213]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGIWPENNGDAGVASSPTDIKGKYVESVTVTNGVVTATMNSSNVNKEI
KDKRLSLWAKRENGSVKWFCGQPVKRANDAAKDAVTADAKDAIETKHLPSTCRDKSTAT

Nucleotide


Download         Length: 420 bp        

>NTDB_id=424250 G5S46_RS10740 WP_172763054.1 2057729..2058148(-) (pilE) [Neisseria gonorrhoeae strain CT213]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATAACGGCATATGGCCGGAAAACAACGGTGATGCCGGCGTGGCATCCTCCCCCACCGACATCAAAG
GCAAATATGTTGAAAGCGTTACGGTCACAAACGGCGTCGTCACCGCCACAATGAATTCAAGCAACGTAAACAAAGAAATC
AAAGACAAAAGACTCTCCCTGTGGGCCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGC
CAACGACGCCGCCAAAGACGCCGTTACCGCCGACGCCAAAGACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCG
ATAAATCAACTGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.429

100

0.719
  pilE Neisseria gonorrhoeae strain FA1090

67.143

100

0.676