Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G5S46_RS10590 Genome accession   NZ_CP048929
Coordinates   2029672..2030064 (-) Length   130 a.a.
NCBI ID   WP_308340361.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT213     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2024672..2035064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S46_RS10570 (G5S46_10405) - 2024859..2025800 (-) 942 WP_003686969.1 ABC transporter ATP-binding protein -
  G5S46_RS10575 (G5S46_10410) - 2025809..2026684 (-) 876 WP_003686971.1 NUDIX hydrolase family protein -
  G5S46_RS10585 (G5S46_10420) thiC 2027282..2029183 (+) 1902 WP_003697841.1 phosphomethylpyrimidine synthase ThiC -
  G5S46_RS10590 (G5S46_10425) pilE 2029672..2030064 (-) 393 WP_308340361.1 pilin Machinery gene
  G5S46_RS10595 (G5S46_10430) - 2030416..2030814 (-) 399 Protein_2061 pilin -
  G5S46_RS12190 - 2030973..2031326 (-) 354 Protein_2062 pilin -
  G5S46_RS12195 - 2031366..2031773 (-) 408 Protein_2063 pilin -
  G5S46_RS10605 (G5S46_10440) - 2032155..2032580 (-) 426 Protein_2064 pilin -
  G5S46_RS10610 (G5S46_10445) - 2033060..2033425 (-) 366 Protein_2065 pilin -
  G5S46_RS12480 - 2033637..2033951 (-) 315 Protein_2066 pilin -
  G5S46_RS10620 (G5S46_10455) - 2033949..2034263 (+) 315 Protein_2067 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14109.02 Da        Isoelectric Point: 10.1088

>NTDB_id=424248 G5S46_RS10590 WP_308340361.1 2029672..2030064(-) (pilE) [Neisseria gonorrhoeae strain CT213]
MPAGILKHRPKKSAVAGYCPNHGKWPENNTSAGVASPPSDIKGKYVKEVEVKNGVVTATMLSSGVNKEIKGKKLSLWARR
QDGSVKWFCGQPVTRAKAKDDKADDVTKDDTNAIETKHLPSTCRDNFDAS

Nucleotide


Download         Length: 393 bp        

>NTDB_id=424248 G5S46_RS10590 WP_308340361.1 2029672..2030064(-) (pilE) [Neisseria gonorrhoeae strain CT213]
TTGCCCGCCGGAATATTAAAACACCGCCCAAAAAAATCAGCCGTTGCCGGGTATTGCCCGAATCACGGCAAATGGCCGGA
AAACAACACTTCTGCCGGCGTGGCATCCCCCCCCTCCGACATCAAAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACG
GCGTCGTTACCGCCACAATGCTTTCAAGCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAGGCGT
CAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCAAAGCCAAAGACGACAAAGCCGACGACGTCAC
CAAAGACGACACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATAACTTTGATGCCAGCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

76.86

93.077

0.715
  pilE Neisseria gonorrhoeae strain FA1090

65.354

97.692

0.638