Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   G5S46_RS02290 Genome accession   NZ_CP048929
Coordinates   449016..449678 (+) Length   220 a.a.
NCBI ID   WP_050162868.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain CT213     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444016..454678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5S46_RS02265 (G5S46_02285) cysT 444146..444975 (-) 830 Protein_447 sulfate ABC transporter permease subunit CysT -
  G5S46_RS02270 (G5S46_02290) - 445156..445488 (+) 333 WP_003687908.1 hypothetical protein -
  G5S46_RS02275 (G5S46_02295) - 445819..446328 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  G5S46_RS02280 (G5S46_02300) - 446558..447139 (-) 582 WP_003698180.1 superoxide dismutase -
  G5S46_RS02285 (G5S46_02305) dnaB 447302..448708 (+) 1407 WP_050171192.1 replicative DNA helicase -
  G5S46_RS02290 (G5S46_02310) pilH 449016..449678 (+) 663 WP_050162868.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G5S46_RS02295 (G5S46_02315) pilV 449710..450321 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  G5S46_RS02300 (G5S46_02320) pilJ 450318..451298 (+) 981 WP_219501175.1 PilW family protein Machinery gene
  G5S46_RS02305 (G5S46_02325) pilK 451277..451885 (+) 609 WP_050171190.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  G5S46_RS02310 (G5S46_02330) pilL 451887..452360 (+) 474 WP_025455985.1 PilX family type IV pilin Machinery gene
  G5S46_RS02315 (G5S46_02335) - 452430..452738 (-) 309 WP_010359926.1 AzlD family protein -
  G5S46_RS02320 (G5S46_02340) - 452735..453445 (-) 711 Protein_458 AzlC family ABC transporter permease -
  G5S46_RS02325 (G5S46_02345) dut 453611..454063 (+) 453 WP_010359930.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24313.78 Da        Isoelectric Point: 9.5621

>NTDB_id=424216 G5S46_RS02290 WP_050162868.1 449016..449678(+) (pilH) [Neisseria gonorrhoeae strain CT213]
MCTRKQQGFTLIELLIVMAIAAIMATIALPNMGGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NGCDFSKKGRGMLAFGDKNGNKAYDGDTKDVFLRNVVLNDTDDSRINYAFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTSAVCKY

Nucleotide


Download         Length: 663 bp        

>NTDB_id=424216 G5S46_RS02290 WP_050162868.1 449016..449678(+) (pilH) [Neisseria gonorrhoeae strain CT213]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGGGCGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATGGATGTGATTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TACTAAGGATGTTTTTCTCCGCAACGTGGTATTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCGTAAAAACGATA
CGAGCGCCGTATGCAAATATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

95.909

100

0.959