Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IFO96_RS17040 Genome accession   NZ_CP062211
Coordinates   3516589..3517326 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain L3Cip3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3511589..3522326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFO96_RS17025 (IFO96_17025) clpC 3512043..3514616 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  IFO96_RS17030 (IFO96_17030) yfiH 3514746..3515477 (-) 732 WP_029402462.1 purine nucleoside phosphorylase YfiH -
  IFO96_RS17035 (IFO96_17035) rluD 3515474..3516454 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IFO96_RS17040 (IFO96_17040) comL 3516589..3517326 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IFO96_RS17045 (IFO96_17045) raiA 3517597..3517938 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IFO96_RS17050 (IFO96_17050) pheL 3518042..3518089 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  IFO96_RS17055 (IFO96_17055) pheA 3518188..3519348 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  IFO96_RS17060 (IFO96_17060) tyrA 3519391..3520512 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IFO96_RS17065 (IFO96_17065) aroF 3520523..3521593 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IFO96_RS17070 (IFO96_17070) yfiL 3521803..3522168 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=424112 IFO96_RS17040 WP_000197686.1 3516589..3517326(+) (comL) [Escherichia coli strain L3Cip3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=424112 IFO96_RS17040 WP_000197686.1 3516589..3517326(+) (comL) [Escherichia coli strain L3Cip3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376