Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   G4V49_RS10040 Genome accession   NZ_CP048911
Coordinates   1933300..1933695 (-) Length   131 a.a.
NCBI ID   WP_243412380.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH204     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1928300..1938695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V49_RS10020 rfbC 1928375..1928932 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  G4V49_RS10025 - 1928976..1930994 (-) 2019 WP_003690255.1 oligopeptide transporter, OPT family -
  G4V49_RS10030 dnaJ 1931189..1932310 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  G4V49_RS10035 - 1932444..1932893 (+) 450 WP_017147004.1 transposase -
  G4V49_RS10040 comE 1933300..1933695 (-) 396 WP_243412380.1 helix-hairpin-helix domain-containing protein Machinery gene
  G4V49_RS12255 - 1933797..1933916 (-) 120 Protein_1956 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13786.57 Da        Isoelectric Point: 10.8790

>NTDB_id=424109 G4V49_RS10040 WP_243412380.1 1933300..1933695(-) (comE) [Neisseria gonorrhoeae strain SRRSH204]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGSAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=424109 G4V49_RS10040 WP_243412380.1 1933300..1933695(-) (comE) [Neisseria gonorrhoeae strain SRRSH204]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCTCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992