Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   G4V49_RS02325 Genome accession   NZ_CP048911
Coordinates   450930..451406 (+) Length   158 a.a.
NCBI ID   WP_203004379.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH204     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445930..456406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V49_RS02300 dnaB 446492..447898 (+) 1407 WP_047917169.1 replicative DNA helicase -
  G4V49_RS02305 pilH 448053..448718 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G4V49_RS02310 pilV 448750..449361 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  G4V49_RS02315 pilJ 449358..450338 (+) 981 WP_203029633.1 PilW family protein Machinery gene
  G4V49_RS02320 pilK 450317..450928 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  G4V49_RS02325 pilL 450930..451406 (+) 477 WP_203004379.1 PilX family type IV pilin Machinery gene
  G4V49_RS02330 - 451476..451784 (-) 309 WP_010951048.1 AzlD family protein -
  G4V49_RS02335 - 451781..452488 (-) 708 Protein_460 AzlC family ABC transporter permease -
  G4V49_RS02340 dut 452654..453106 (+) 453 WP_103195211.1 dUTP diphosphatase -
  G4V49_RS02345 dapC 453184..454371 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  G4V49_RS02350 yaaA 454682..455461 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.47 Da        Isoelectric Point: 9.4067

>NTDB_id=424087 G4V49_RS02325 WP_203004379.1 450930..451406(+) (pilL) [Neisseria gonorrhoeae strain SRRSH204]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 477 bp        

>NTDB_id=424087 G4V49_RS02325 WP_203004379.1 450930..451406(+) (pilL) [Neisseria gonorrhoeae strain SRRSH204]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATG
CCACTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-158)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

99.367

100

0.994
  pilX Neisseria meningitidis 8013

85.443

100

0.854