Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   G4V51_RS10090 Genome accession   NZ_CP048908
Coordinates   1933197..1933592 (-) Length   131 a.a.
NCBI ID   WP_243412380.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH203     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1928197..1938592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V51_RS10070 rfbC 1928272..1928829 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  G4V51_RS10075 - 1928873..1930891 (-) 2019 WP_003690255.1 oligopeptide transporter, OPT family -
  G4V51_RS10080 dnaJ 1931086..1932207 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  G4V51_RS10085 - 1932341..1932790 (+) 450 WP_017147004.1 transposase -
  G4V51_RS10090 comE 1933197..1933592 (-) 396 WP_243412380.1 helix-hairpin-helix domain-containing protein Machinery gene
  G4V51_RS12305 - 1933694..1933813 (-) 120 Protein_1961 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13786.57 Da        Isoelectric Point: 10.8790

>NTDB_id=424062 G4V51_RS10090 WP_243412380.1 1933197..1933592(-) (comE) [Neisseria gonorrhoeae strain SRRSH203]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGSAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=424062 G4V51_RS10090 WP_243412380.1 1933197..1933592(-) (comE) [Neisseria gonorrhoeae strain SRRSH203]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCTCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992
  comE Neisseria gonorrhoeae MS11

99.237

100

0.992