Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IG172_RS06390 Genome accession   NZ_CP062204
Coordinates   1283470..1284207 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain C311     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1278470..1289207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG172_RS06360 (IG172_06355) yfiL 1278628..1278993 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  IG172_RS06365 (IG172_06360) aroF 1279203..1280273 (+) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IG172_RS06370 (IG172_06365) tyrA 1280284..1281405 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IG172_RS06375 (IG172_06370) pheA 1281448..1282608 (-) 1161 WP_192292203.1 bifunctional chorismate mutase/prephenate dehydratase -
  IG172_RS06380 (IG172_06375) pheL 1282707..1282754 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  IG172_RS06385 (IG172_06380) raiA 1282858..1283199 (-) 342 WP_192292206.1 ribosome-associated translation inhibitor RaiA -
  IG172_RS06390 (IG172_06385) comL 1283470..1284207 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IG172_RS06395 (IG172_06390) rluD 1284342..1285322 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IG172_RS06400 (IG172_06395) yfiH 1285319..1286050 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  IG172_RS06405 (IG172_06400) clpC 1286180..1288753 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=424009 IG172_RS06390 WP_000197686.1 1283470..1284207(-) (comL) [Escherichia coli strain C311]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=424009 IG172_RS06390 WP_000197686.1 1283470..1284207(-) (comL) [Escherichia coli strain C311]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376