Detailed information NTG0424005

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IG172_RS05495
• Genome accession: NZ_CP062204
• Coordinates: 1129656..1130648 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain C311
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1124656..1135648

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IG172_RS05465 (IG172_05460)	ispD	1124717..1125427 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IG172_RS05470 (IG172_05465)	ispF	1125427..1125906 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IG172_RS05475 (IG172_05470)	truD	1125903..1126952 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IG172_RS05480 (IG172_05475)	surE	1126933..1127694 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IG172_RS05485 (IG172_05480)	pcm	1127688..1128314 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
IG172_RS05490 (IG172_05485)	nlpD	1128499..1129593 (+)	1095	WP_306218436.1	murein hydrolase activator NlpD	-
IG172_RS05495 (IG172_05490)	rpoS	1129656..1130648 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IG172_RS05500 (IG172_05495)	-	1130769..1131176 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
IG172_RS05505 (IG172_05500)	-	1131323..1131916 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
IG172_RS05510 (IG172_05505)	-	1131916..1133343 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
IG172_RS05515 (IG172_05510)	-	1133354..1133590 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
IG172_RS05520 (IG172_05515)	ygbN	1133629..1134993 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=424005 IG172_RS05495 WP_000081550.1 1129656..1130648(+) (rpoS) [Escherichia coli strain C311]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=424005 IG172_RS05495 WP_000081550.1 1129656..1130648(+) (rpoS) [Escherichia coli strain C311]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715