Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   G4V53_RS01410 Genome accession   NZ_CP048902
Coordinates   280096..280899 (-) Length   267 a.a.
NCBI ID   WP_203004368.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH207     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 275096..285899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V53_RS01400 - 277500..277775 (-) 276 WP_153707850.1 hypothetical protein -
  G4V53_RS01405 comA 277807..280026 (+) 2220 WP_010359837.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  G4V53_RS01410 comL 280096..280899 (-) 804 WP_203004368.1 outer membrane protein assembly factor BamD Machinery gene
  G4V53_RS01415 rluD 280898..282022 (+) 1125 WP_003687642.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  G4V53_RS01420 - 282175..283122 (-) 948 Protein_282 bile acid:sodium symporter family protein -
  G4V53_RS01430 pgeF 283576..284355 (+) 780 WP_003690756.1 peptidoglycan editing factor PgeF -
  G4V53_RS01435 lptE 284407..284886 (+) 480 WP_003690758.1 LPS assembly lipoprotein LptE -
  G4V53_RS01440 holA 284888..285886 (+) 999 WP_003690761.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30785.85 Da        Isoelectric Point: 8.7197

>NTDB_id=423938 G4V53_RS01410 WP_203004368.1 280096..280899(-) (comL) [Neisseria gonorrhoeae strain SRRSH207]
MKKILLTVSLGLALSACATQGTADKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEMSVARYYMKCGAYIAAANRAKKIIGSYQNTRYVEESLAILELAYKKLDKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=423938 G4V53_RS01410 WP_203004368.1 280096..280899(-) (comL) [Neisseria gonorrhoeae strain SRRSH207]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGCCGACAAAGATGC
CCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
CATGGATTACGCGCTGTACCTGCGCGGCTTGGTGCTGTTTAACGAAGACCAGTCCTTCCTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCTTTGGGCGGCAATGAAATGTCGGTGGCGCGTTA
CTACATGAAATGCGGCGCATATATCGCCGCCGCCAACCGCGCCAAAAAAATTATCGGCAGCTATCAAAATACACGCTATG
TCGAAGAATCACTGGCCATATTGGAACTTGCCTACAAGAAGTTGGACAAGCCCCAGCTTGCCGCCGATACGCGCCGCGTA
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

99.625

100

0.996
  comL Neisseria meningitidis MC58

95.88

100

0.959