Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   IGX36_RS09470 Genome accession   NZ_CP062203
Coordinates   1977150..1978577 (-) Length   475 a.a.
NCBI ID   WP_074150192.1    Uniprot ID   -
Organism   Escherichia coli strain K_EC180     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1972150..1983577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGX36_RS09435 (IGX36_09435) yefM 1972358..1972609 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  IGX36_RS09440 (IGX36_09440) yoeB 1972606..1972859 (+) 254 Protein_1866 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  IGX36_RS09445 (IGX36_09445) yeeZ 1972942..1973766 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  IGX36_RS09450 (IGX36_09450) yeeY 1973812..1974741 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  IGX36_RS09455 (IGX36_09455) yoeI 1974955..1975017 (+) 63 WP_010723108.1 membrane protein YoeI -
  IGX36_RS09460 (IGX36_09460) plaP 1975007..1976365 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  IGX36_RS09465 (IGX36_09465) tnpA 1976579..1977037 (+) 459 WP_000526135.1 IS200/IS605-like element IS200C family transposase -
  IGX36_RS09470 (IGX36_09470) sbcB 1977150..1978577 (-) 1428 WP_074150192.1 exodeoxyribonuclease I Machinery gene
  IGX36_RS09475 (IGX36_09475) dacD 1978786..1979952 (+) 1167 WP_063085169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  IGX36_RS09480 (IGX36_09480) sbmC 1980071..1980544 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  IGX36_RS09485 (IGX36_09485) yeeA 1980742..1981800 (+) 1059 WP_063118579.1 FUSC family protein -
  IGX36_RS09490 (IGX36_09490) tmaR 1981972..1982301 (+) 330 WP_000450409.1 DUF496 family protein -
  IGX36_RS09495 (IGX36_09495) - 1982402..1982845 (-) 444 WP_192297615.1 EutP/PduV family microcompartment system protein -
  IGX36_RS09500 (IGX36_09500) pduU 1982850..1983200 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54470.79 Da        Isoelectric Point: 5.4720

>NTDB_id=423938 IGX36_RS09470 WP_074150192.1 1977150..1978577(-) (sbcB) [Escherichia coli strain K_EC180]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDV
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=423938 IGX36_RS09470 WP_074150192.1 1977150..1978577(-) (sbcB) [Escherichia coli strain K_EC180]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCTGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCACACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTACACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGTC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579