Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   G4V50_RS11010 Genome accession   NZ_CP048899
Coordinates   2108546..2108863 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain SRRSH214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2103546..2113863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V50_RS10960 - 2103878..2104260 (-) 383 Protein_2125 pilin -
  G4V50_RS12280 - 2104395..2104880 (-) 486 WP_125121586.1 pilin -
  G4V50_RS10975 - 2104937..2105321 (-) 385 Protein_2127 pilin -
  G4V50_RS12285 - 2105456..2105941 (-) 486 WP_125121586.1 pilin -
  G4V50_RS10990 - 2105998..2106345 (-) 348 Protein_2129 pilin -
  G4V50_RS10995 - 2106398..2106791 (-) 394 Protein_2130 pilin -
  G4V50_RS11000 - 2106926..2107368 (-) 443 Protein_2131 pilin -
  G4V50_RS12450 - 2107894..2108538 (-) 645 WP_269471826.1 pilin -
  G4V50_RS11010 pilE 2108546..2108863 (-) 318 WP_003697861.1 pilin Machinery gene
  G4V50_RS11015 - 2109193..2109384 (+) 192 WP_014580443.1 hypothetical protein -
  G4V50_RS11020 - 2109448..2110137 (-) 690 WP_003696506.1 M48 family metallopeptidase -
  G4V50_RS11025 - 2110134..2110877 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  G4V50_RS11030 gmhB 2110907..2111470 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  G4V50_RS11035 - 2111613..2113265 (+) 1653 WP_203029625.1 LTA synthase family protein -
  G4V50_RS12295 - 2113332..2113790 (-) 459 Protein_2139 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=423928 G4V50_RS11010 WP_003697861.1 2108546..2108863(-) (pilE) [Neisseria gonorrhoeae strain SRRSH214]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=423928 G4V50_RS11010 WP_003697861.1 2108546..2108863(-) (pilE) [Neisseria gonorrhoeae strain SRRSH214]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41