Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   G4V54_RS08025 Genome accession   NZ_CP048896
Coordinates   1563366..1564010 (-) Length   214 a.a.
NCBI ID   WP_003689466.1    Uniprot ID   Q5F6K3
Organism   Neisseria gonorrhoeae strain SRRSH229     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1558366..1569010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4V54_RS07990 ftsL 1558847..1559110 (-) 264 WP_003701583.1 cell division protein FtsL -
  G4V54_RS07995 rsmH 1559137..1560093 (-) 957 WP_003689462.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  G4V54_RS08000 mraZ 1560090..1560545 (-) 456 WP_003689463.1 division/cell wall cluster transcriptional repressor MraZ -
  G4V54_RS08005 - 1560824..1562071 (+) 1248 WP_010951292.1 class I SAM-dependent methyltransferase -
  G4V54_RS08020 - 1562512..1563333 (-) 822 WP_003689465.1 undecaprenyl-diphosphate phosphatase -
  G4V54_RS08025 dsbA1 1563366..1564010 (-) 645 WP_003689466.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  G4V54_RS08030 ftsN 1564013..1564876 (-) 864 WP_010360712.1 cell division protein FtsN -
  G4V54_RS08035 comM 1564982..1566478 (-) 1497 WP_003689469.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  G4V54_RS08040 - 1566492..1566812 (-) 321 WP_002216505.1 accessory factor UbiK family protein -
  G4V54_RS08045 putP 1567300..1568826 (+) 1527 WP_003689473.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24003.07 Da        Isoelectric Point: 9.9225

>NTDB_id=423869 G4V54_RS08025 WP_003689466.1 1563366..1564010(-) (dsbA1) [Neisseria gonorrhoeae strain SRRSH229]
MKFKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQPGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDTYLRTEH
VVWRPEMLGLARMAAAVKLSGLKYQANSAVFKAVYEQKIRLENRAVAGKWALSQKGFDGKKLMRAYDSPEAAAVALKMQK
LTEQYGIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=423869 G4V54_RS08025 WP_003689466.1 1563366..1564010(-) (dsbA1) [Neisseria gonorrhoeae strain SRRSH229]
ATGAAGTTTAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGCCGGGAAAAATTGAGGTTTTGGAATTTTTCGGCTATTTTTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATACTTATCTGCGGACGGAGCAC
GTGGTCTGGCGGCCTGAAATGCTCGGTCTGGCAAGAATGGCTGCTGCGGTCAAGCTGTCGGGTTTGAAATATCAGGCAAA
CTCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGTTTGGAAAACAGGGCTGTTGCCGGAAAATGGGCTTTATCTC
AAAAAGGTTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGTCGCATTAAAAATGCAGAAA
CTGACGGAACAATACGGTATTGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAATGGCTT
TGATGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F6K3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

52.688

86.916

0.458