Detailed information NTG0423718

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: G4Y78_RS22480
• Genome accession: NZ_CP048878
• Coordinates: 4942947..4944320 (+)
• Length: 457 a.a.
• NCBI ID: WP_329604900.1
• Uniprot ID: -
• Organism: Spartinivicinus ruber strain S2-4-1H
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4937947..4949320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G4Y78_RS22465	-	4938450..4939475 (+)	1026	WP_230425635.1	outer membrane protein assembly factor BamD	-
G4Y78_RS22470	-	4939550..4941172 (-)	1623	WP_163835131.1	NAD+ synthase	-
G4Y78_RS22475	-	4941322..4942929 (+)	1608	WP_163835132.1	PAS domain-containing sensor histidine kinase	-
G4Y78_RS22480	pilR	4942947..4944320 (+)	1374	WP_329604900.1	sigma-54 dependent transcriptional regulator	Regulator
G4Y78_RS22485	-	4944637..4945209 (+)	573	WP_163836571.1	GspH/FimT family pseudopilin	-
G4Y78_RS22490	-	4945331..4945744 (+)	414	WP_163836572.1	GspH/FimT family pseudopilin	-
G4Y78_RS22495	pilV	4945761..4946285 (+)	525	WP_163835133.1	type IV pilus modification protein PilV	-
G4Y78_RS22500	-	4946291..4946992 (+)	702	WP_268935008.1	PilW family protein	-
G4Y78_RS22505	-	4947010..4947507 (+)	498	WP_163835135.1	PilX N-terminal domain-containing pilus assembly protein	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 50793.28 Da
• Isoelectric Point: 5.8992

>NTDB_id=423718 G4Y78_RS22480 WP_329604900.1 4942947..4944320(+) (pilR) [Spartinivicinus ruber strain S2-4-1H]
MRLKTMANPLVLIVDDEPDIRELLEITLGRMKIDTEAASSLEQAYQHLTNQAFDLCLTDMNLPDGNGIDLVKHIQQHYSK
IPVAMITAYGNMDTAITALKAGAFDFVSKPVDLQRLRDLVSSALKLNKSNHAAEVKITSETQLLGDSKAIKQLRKQVIKL
ARSQAPVYISGESGSGKELVARLIHEEGARADAPFIPVNCGAIPSELMESEFFGHKKGSFTGAVNDKPGLFQAANGGTLF
LDEVADLPISMQVKLLRAIQEKSIRPVGTENEIKVDIRILSATHKELNQLVNEGNFRQDLFYRINVIELKVPPLRERPED
IPLLAQHFLNKIANSCDLTPPHLSREALATLKNYAFPGNVRELENTLERAFTLCEEDIIQRDDLKLSDTETSNPLALQAT
TPPPGGVSSLEDYLEDLERKAIVQALEDTRWNKTAAAKKLGITFRALRYRLKKLDLE

Nucleotide

• Length: 1374 bp

>NTDB_id=423718 G4Y78_RS22480 WP_329604900.1 4942947..4944320(+) (pilR) [Spartinivicinus ruber strain S2-4-1H]
ATGAGACTGAAAACCATGGCAAACCCTTTGGTGCTAATAGTTGATGATGAGCCAGATATTAGGGAGCTTTTGGAAATCAC
CTTAGGACGCATGAAAATAGACACTGAAGCAGCCAGTAGCCTTGAACAAGCTTATCAACACTTGACCAACCAGGCTTTTG
ATCTCTGTTTAACCGATATGAACCTACCTGACGGAAATGGTATTGACCTAGTTAAACACATCCAACAACACTACAGTAAA
ATTCCAGTCGCAATGATAACTGCCTATGGCAATATGGATACCGCTATTACCGCATTAAAGGCTGGCGCTTTTGATTTTGT
TTCCAAGCCTGTTGACTTACAACGCCTGCGTGATTTAGTCAGTTCTGCCTTAAAATTAAATAAGTCCAATCATGCTGCCG
AAGTAAAAATTACCAGTGAAACTCAGTTACTAGGTGACTCAAAAGCCATTAAGCAATTACGTAAACAAGTAATCAAACTG
GCTAGAAGTCAAGCCCCTGTTTATATCAGCGGTGAATCTGGAAGCGGTAAGGAATTAGTGGCTCGACTTATTCATGAAGA
AGGTGCCCGTGCAGACGCACCTTTCATACCCGTCAATTGTGGTGCAATCCCTTCAGAACTAATGGAAAGTGAGTTCTTTG
GCCATAAAAAAGGTAGCTTTACCGGCGCTGTTAACGATAAACCAGGGCTATTTCAAGCAGCTAATGGCGGCACCTTATTT
TTAGATGAAGTAGCCGATTTACCTATATCTATGCAAGTTAAATTATTACGAGCAATTCAAGAAAAGTCGATCCGCCCCGT
GGGCACTGAAAATGAAATTAAGGTAGATATCAGGATTCTCAGTGCAACCCATAAAGAACTTAATCAACTGGTTAATGAAG
GGAATTTTCGCCAAGACTTATTCTATCGAATCAATGTTATTGAATTAAAAGTTCCCCCCTTAAGAGAACGCCCAGAAGAT
ATCCCTTTATTGGCTCAGCATTTCTTGAATAAAATTGCCAATAGTTGTGATTTAACACCACCCCACCTTTCCAGAGAAGC
CTTAGCTACTCTGAAAAATTATGCTTTTCCAGGCAATGTCAGAGAACTGGAAAACACTTTAGAAAGAGCATTTACCCTTT
GTGAGGAAGATATCATTCAAAGAGATGACCTTAAGCTAAGTGATACTGAAACTAGCAACCCGCTTGCGTTACAAGCAACC
ACACCACCTCCAGGAGGTGTTAGCTCTCTAGAAGACTATTTGGAAGATTTAGAGCGCAAAGCCATTGTTCAAGCCTTAGA
AGATACTCGCTGGAATAAAACGGCTGCAGCGAAAAAACTGGGCATTACCTTTCGAGCCCTTCGTTACCGACTAAAGAAAT
TAGATTTAGAATAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (144-309)

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (11-120)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	65.487	98.906	0.648
pilR	Acinetobacter baumannii strain A118	54.447	100	0.549