Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IF561_RS10660 Genome accession   NZ_CP062150
Coordinates   2261976..2262704 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain 19-VB00998     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2256976..2267704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF561_RS10645 (IF561_10630) clpC 2257411..2259984 (-) 2574 WP_025502266.1 ATP-dependent chaperone ClpB Regulator
  IF561_RS10650 (IF561_10635) pgeF 2260132..2260860 (-) 729 WP_069506118.1 peptidoglycan editing factor PgeF -
  IF561_RS10655 (IF561_10640) rluD 2260862..2261839 (-) 978 WP_005460300.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IF561_RS10660 (IF561_10645) comL 2261976..2262704 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  IF561_RS10665 (IF561_10650) - 2262863..2264320 (+) 1458 WP_264400652.1 lytic transglycosylase F -
  IF561_RS10670 (IF561_10655) hpf 2264651..2264977 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  IF561_RS10675 (IF561_10660) pheA 2265221..2266399 (+) 1179 WP_005468591.1 prephenate dehydratase -
  IF561_RS10680 (IF561_10665) yjjX 2266424..2266957 (+) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  IF561_RS10685 (IF561_10670) trpR 2267006..2267317 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=423698 IF561_RS10660 WP_005460312.1 2261976..2262704(+) (comL) [Vibrio parahaemolyticus strain 19-VB00998]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=423698 IF561_RS10660 WP_005460312.1 2261976..2262704(+) (comL) [Vibrio parahaemolyticus strain 19-VB00998]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCACTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405