Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   IF561_RS03375 Genome accession   NZ_CP062150
Coordinates   732501..733145 (+) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain 19-VB00998     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 727501..738145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF561_RS03355 (IF561_03365) - 727798..728118 (-) 321 WP_005465080.1 HI1450 family dsDNA-mimic protein -
  IF561_RS03360 (IF561_03370) yeiP 728121..728687 (-) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  IF561_RS03365 (IF561_03375) - 728874..729641 (+) 768 WP_021454126.1 nucleotidyltransferase domain-containing protein -
  IF561_RS03370 (IF561_03380) - 729638..732001 (-) 2364 WP_264401115.1 DNA polymerase II -
  IF561_RS03375 (IF561_03385) letA 732501..733145 (+) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  IF561_RS03380 (IF561_03390) uvrC 733147..734979 (+) 1833 WP_264401116.1 excinuclease ABC subunit UvrC Machinery gene
  IF561_RS03385 (IF561_03395) pgsA 735026..735583 (+) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=423668 IF561_RS03375 WP_005386783.1 732501..733145(+) (letA) [Vibrio parahaemolyticus strain 19-VB00998]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=423668 IF561_RS03375 WP_005386783.1 732501..733145(+) (letA) [Vibrio parahaemolyticus strain 19-VB00998]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTGAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCTGGTGCTTCTGGTTATTTAACCAAAGGTGCTGG
GCCGGATGAAATGGTAAATGCAATTCGTGTGGTCAATAGTGGGCAGCGTTACATCTCTCCAGAGATAGCGCAGCAAATGG
CATTGAGCCAGTTCTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCGAAGACAGTCAACAGCTACCGCTATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTTGAGTTAACACACTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5