Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPB14_RS02720 Genome accession   NC_017733
Coordinates   546532..548052 (+) Length   506 a.a.
NCBI ID   WP_000611057.1    Uniprot ID   -
Organism   Helicobacter pylori HUP-B14     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 541532..553052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB14_RS02690 (HPB14_02680) moaC 541677..542153 (+) 477 WP_001131531.1 cyclic pyranopterin monophosphate synthase MoaC -
  HPB14_RS02695 (HPB14_02685) hpaA 542272..543054 (+) 783 WP_000646657.1 flagellar sheath lipoprotein HpaA -
  HPB14_RS02700 (HPB14_02690) - 543087..543923 (+) 837 WP_000375480.1 outer membrane protein -
  HPB14_RS02705 (HPB14_02695) tig 544034..545389 (+) 1356 WP_001047766.1 trigger factor -
  HPB14_RS02710 (HPB14_02700) clpP 545410..545997 (+) 588 WP_000540576.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPB14_RS02715 (HPB14_02705) def 546002..546526 (+) 525 WP_001185803.1 peptide deformylase -
  HPB14_RS02720 (HPB14_02710) comM 546532..548052 (+) 1521 WP_000611057.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPB14_RS02725 (HPB14_02715) - 548077..550137 (+) 2061 WP_001158776.1 heavy metal translocating P-type ATPase -
  HPB14_RS02730 (HPB14_02720) - 550160..551389 (+) 1230 WP_000394388.1 DNA cytosine methyltransferase -
  HPB14_RS02735 (HPB14_02725) - 551376..552128 (+) 753 WP_000609185.1 hypothetical protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57184.24 Da        Isoelectric Point: 8.6908

>NTDB_id=42366 HPB14_RS02720 WP_000611057.1 546532..548052(+) (comM) [Helicobacter pylori HUP-B14]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKRPHAKVIVPKANEELFSLIPNLQCFFVGHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREIVQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSSFNGKLNEEQIERFCPLNAEAKKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIERSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=42366 HPB14_RS02720 WP_000611057.1 546532..548052(+) (comM) [Helicobacter pylori HUP-B14]
ATGATTAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCAGAAATCGTAGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGATTGGCTAATAATTCTATCCAAGAAGCCAAGCAACGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGGAGTCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCTAAAG
TCATTGTGCCTAAGGCGAATGAAGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGGGCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTCAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAATTTGATTTTAGAGGGAAGCCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCCTTAAGGAGTTTTAGAAACCCTCACCAAAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGCATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTGAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAAATTGAATACGAAAC
CTCTTTTTTATTCGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCTACCAAAGCATGCCGTTGCCAAG
ATAGAGAAATTGTGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTAGACAGGATTGATTTGTTCGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTGGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCTCTTTTAATGGTAAGCTTAATGAAGAGCAGATCGAACGATTTTGCCCTTTAAACGCTGAAG
CAAAAAAGTTGTTAGAGCAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTGAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAGATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.431

100

0.974
  comM Acinetobacter baylyi ADP1

36.204

100

0.366
  comM Legionella pneumophila str. Paris

36.382

99.407

0.362
  comM Legionella pneumophila strain ERS1305867

36.382

99.407

0.362