Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NH8B_RS09295 Genome accession   NC_016002
Coordinates   2023478..2024269 (+) Length   263 a.a.
NCBI ID   WP_014087074.1    Uniprot ID   -
Organism   Pseudogulbenkiania sp. NH8B     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2018478..2029269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NH8B_RS20875 - 2021420..2021614 (+) 195 WP_148282961.1 hypothetical protein -
  NH8B_RS09285 (NH8B_1921) pgeF 2021661..2022404 (-) 744 WP_014087072.1 peptidoglycan editing factor PgeF -
  NH8B_RS09290 (NH8B_1922) rluD 2022391..2023479 (-) 1089 WP_014087073.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  NH8B_RS09295 (NH8B_1923) comL 2023478..2024269 (+) 792 WP_014087074.1 outer membrane protein assembly factor BamD Machinery gene
  NH8B_RS09300 (NH8B_1924) pgaD 2024513..2024947 (-) 435 WP_014087075.1 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD -
  NH8B_RS09305 (NH8B_1925) pgaC 2024971..2026239 (-) 1269 WP_008954084.1 poly-beta-1,6-N-acetyl-D-glucosamine synthase -
  NH8B_RS09310 (NH8B_1926) pgaB 2026248..2028215 (-) 1968 WP_014087076.1 poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB -
  NH8B_RS09315 (NH8B_1927) - 2028509..2028847 (-) 339 WP_008954086.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30383.39 Da        Isoelectric Point: 6.9813

>NTDB_id=42365 NH8B_RS09295 WP_014087074.1 2023478..2024269(+) (comL) [Pseudogulbenkiania sp. NH8B]
MKRYVAAMLVALSLAGCASNEPYDETRSWTVEKLYAEARDELNSGNYTRAVKLYEALEARFPYGRYAQQSEMDLAYTHYK
DNEPELAIAAADRFIKLHPTHPNLDYVLYLKGLVYYNDDSGLLAKWAGQDMSERDPRATREAFLAFRELTSRFPNSQYSA
DATEKMNKLIKALGGHEMHVARYYMKRDAYLAAAGRAQNVVKEYANTGYLEEALALTVTAYDKLGMPQLRDDARRVLELN
YPKSQYLAKGWQTEEMPWWKFWK

Nucleotide


Download         Length: 792 bp        

>NTDB_id=42365 NH8B_RS09295 WP_014087074.1 2023478..2024269(+) (comL) [Pseudogulbenkiania sp. NH8B]
ATGAAAAGATACGTTGCAGCAATGTTGGTGGCGCTTAGCCTCGCCGGGTGTGCTTCCAATGAGCCGTATGATGAAACACG
CAGTTGGACCGTTGAAAAACTCTACGCCGAGGCAAGGGACGAGTTGAACAGTGGTAATTATACCCGTGCTGTCAAACTCT
ACGAAGCGCTAGAGGCCCGTTTCCCTTATGGACGTTATGCCCAGCAGTCGGAAATGGACCTGGCGTACACCCATTACAAG
GACAATGAGCCGGAACTGGCCATTGCCGCGGCCGACCGTTTCATCAAGCTGCACCCGACACACCCTAACCTCGACTATGT
GCTCTACCTGAAGGGCCTGGTGTATTACAACGATGATTCCGGTCTGCTGGCCAAGTGGGCCGGCCAGGACATGAGCGAGC
GCGATCCGCGCGCGACGCGCGAAGCGTTTCTGGCGTTCCGCGAGCTGACCAGCCGCTTCCCCAACAGCCAGTACTCGGCC
GACGCTACCGAGAAGATGAACAAGCTGATCAAGGCGCTGGGTGGGCACGAAATGCACGTGGCTCGCTATTACATGAAGCG
TGACGCTTACCTCGCCGCCGCCGGCCGGGCGCAGAACGTTGTGAAGGAATACGCCAACACCGGTTATCTGGAAGAGGCCC
TGGCGCTGACCGTAACGGCCTACGACAAATTGGGCATGCCGCAACTGCGTGACGATGCCCGGCGCGTACTGGAACTCAAT
TACCCCAAGAGCCAGTACCTCGCCAAAGGCTGGCAGACGGAAGAAATGCCGTGGTGGAAGTTCTGGAAATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(31-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

57.895

100

0.586
  comL Neisseria gonorrhoeae MS11

57.519

100

0.582

Multiple sequence alignment