Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IE382_RS21950 Genome accession   NZ_CP061870
Coordinates   4082333..4083466 (-) Length   377 a.a.
NCBI ID   WP_041334716.1    Uniprot ID   -
Organism   Bacillus subtilis strain FX-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 4077333..4088466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS21910 (IE382_21815) ywnA 4077467..4077868 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  IE382_RS21915 (IE382_21820) ureC 4078003..4079712 (-) 1710 WP_095844008.1 urease subunit alpha -
  IE382_RS21920 (IE382_21825) ureB 4079709..4080083 (-) 375 WP_088327157.1 urease subunit beta -
  IE382_RS21925 (IE382_21830) ureA 4080080..4080397 (-) 318 WP_242304427.1 urease subunit gamma -
  IE382_RS21930 (IE382_21835) - 4080556..4080750 (-) 195 WP_119899878.1 hypothetical protein -
  IE382_RS23750 (IE382_21840) - 4081013..4081225 (-) 213 Protein_4272 urea ABC transporter substrate-binding protein -
  IE382_RS21940 (IE382_21845) csbD 4081437..4081625 (-) 189 WP_144453655.1 stress response protein CsbD -
  IE382_RS21945 (IE382_21850) - 4081698..4082177 (-) 480 WP_041337870.1 hypothetical protein -
  IE382_RS21950 (IE382_21855) rapC 4082333..4083466 (-) 1134 WP_041334716.1 response regulator aspartate phosphatase RapB Regulator
  IE382_RS21955 (IE382_21860) moaA 4083658..4084683 (-) 1026 WP_015483814.1 GTP 3',8-cyclase MoaA -
  IE382_RS21960 (IE382_21865) fdhD 4084699..4085487 (-) 789 WP_242304429.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  IE382_RS21965 (IE382_21870) - 4085720..4085881 (-) 162 WP_003227706.1 hypothetical protein -
  IE382_RS21970 (IE382_21875) ywmD 4085976..4086650 (-) 675 WP_041334709.1 VWA domain-containing protein -
  IE382_RS21975 (IE382_21880) - 4086703..4086843 (-) 141 WP_014481180.1 hypothetical protein -
  IE382_RS21980 (IE382_21885) ywmC 4086974..4087657 (-) 684 WP_041334706.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45013.12 Da        Isoelectric Point: 4.7537

>NTDB_id=423564 IE382_RS21950 WP_041334716.1 4082333..4083466(-) (rapC) [Bacillus subtilis strain FX-1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALTVFEDYQLEQLPKALFSLTRVLFKKQDSEAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHHEQYKEAVYFYEKAVSMREMIQKNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=423564 IE382_RS21950 WP_041334716.1 4082333..4083466(-) (rapC) [Bacillus subtilis strain FX-1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTATAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATAGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATCGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTACTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCACGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAAGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.368

100

0.427
  rapF Bacillus subtilis subsp. subtilis str. 168

42.4

99.469

0.422