Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AbD4_RS18150 Genome accession   NZ_CP048849
Coordinates   3795011..3795829 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain D4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3790011..3800829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AbD4_RS18135 (AbD4_03658) pilE 3790228..3790653 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  AbD4_RS18140 (AbD4_03659) pilY2 3790650..3791132 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  AbD4_RS18145 (AbD4_03660) pilY1 3791145..3794999 (-) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  AbD4_RS18150 (AbD4_03661) pilX 3795011..3795829 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AbD4_RS18155 (AbD4_03662) pilW 3795826..3796827 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AbD4_RS18160 (AbD4_03663) pilV 3796828..3797388 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AbD4_RS18165 (AbD4_03664) fimU 3797382..3797855 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AbD4_RS18170 (AbD4_03665) ispH 3798025..3798975 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AbD4_RS18175 (AbD4_03666) gmk 3799098..3799727 (+) 630 WP_000015937.1 guanylate kinase -
  AbD4_RS18180 (AbD4_03667) rpoZ 3799800..3800078 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AbD4_RS18185 - 3800117..3800247 (+) 131 Protein_3565 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=423514 AbD4_RS18150 WP_000149374.1 3795011..3795829(-) (pilX) [Acinetobacter baumannii strain D4]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=423514 AbD4_RS18150 WP_000149374.1 3795011..3795829(-) (pilX) [Acinetobacter baumannii strain D4]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993