Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   AbD4_RS18160 Genome accession   NZ_CP048849
Coordinates   3796828..3797388 (-) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain D4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3791828..3802388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AbD4_RS18150 (AbD4_03661) pilX 3795011..3795829 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AbD4_RS18155 (AbD4_03662) pilW 3795826..3796827 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  AbD4_RS18160 (AbD4_03663) pilV 3796828..3797388 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AbD4_RS18165 (AbD4_03664) fimU 3797382..3797855 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AbD4_RS18170 (AbD4_03665) ispH 3798025..3798975 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AbD4_RS18175 (AbD4_03666) gmk 3799098..3799727 (+) 630 WP_000015937.1 guanylate kinase -
  AbD4_RS18180 (AbD4_03667) rpoZ 3799800..3800078 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AbD4_RS18185 - 3800117..3800247 (+) 131 Protein_3565 hypothetical protein -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=423516 AbD4_RS18160 WP_002194578.1 3796828..3797388(-) (pilV) [Acinetobacter baumannii strain D4]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=423516 AbD4_RS18160 WP_002194578.1 3796828..3797388(-) (pilV) [Acinetobacter baumannii strain D4]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414