Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   AbD4_RS08995 Genome accession   NZ_CP048849
Coordinates   1886417..1886797 (+) Length   126 a.a.
NCBI ID   WP_000836910.1    Uniprot ID   A0AAQ1AB09
Organism   Acinetobacter baumannii strain D4     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1881417..1891797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AbD4_RS08965 (AbD4_01805) kdsB 1882320..1883081 (+) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AbD4_RS08970 (AbD4_01806) - 1883093..1884073 (+) 981 WP_001075418.1 DNA polymerase III subunit delta' -
  AbD4_RS08975 (AbD4_01807) - 1884085..1884426 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  AbD4_RS08980 (AbD4_01808) - 1884444..1885217 (+) 774 WP_000497298.1 TatD family hydrolase -
  AbD4_RS08985 (AbD4_01809) - 1885255..1885863 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  AbD4_RS08990 (AbD4_01810) - 1885873..1886427 (+) 555 WP_000841379.1 type II secretion system protein -
  AbD4_RS08995 (AbD4_01811) xcpV 1886417..1886797 (+) 381 WP_000836910.1 type II secretion system minor pseudopilin GspI Machinery gene
  AbD4_RS09000 (AbD4_01812) xcpW 1886797..1887498 (+) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  AbD4_RS09005 (AbD4_01813) gspK 1887498..1888457 (+) 960 WP_000301481.1 type II secretion system minor pseudopilin GspK -
  AbD4_RS09010 (AbD4_01814) - 1888687..1889283 (+) 597 WP_000908450.1 6-pyruvoyl trahydropterin synthase family protein -
  AbD4_RS09015 (AbD4_01815) ung 1889334..1890047 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  AbD4_RS09020 (AbD4_01816) - 1890044..1891168 (+) 1125 WP_111883676.1 enoyl-CoA hydratase/isomerase family protein -
  AbD4_RS09025 (AbD4_01817) tadA 1891175..1891678 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13957.17 Da        Isoelectric Point: 9.8004

>NTDB_id=423501 AbD4_RS08995 WP_000836910.1 1886417..1886797(+) (xcpV) [Acinetobacter baumannii strain D4]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=423501 AbD4_RS08995 WP_000836910.1 1886417..1886797(+) (xcpV) [Acinetobacter baumannii strain D4]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992