Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   IE382_RS10700 Genome accession   NZ_CP061870
Coordinates   2051837..2052268 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain FX-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2046837..2057268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS10680 (IE382_10630) spoVS 2047399..2047659 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  IE382_RS10685 (IE382_10635) tdh 2047924..2048967 (+) 1044 WP_033883737.1 L-threonine 3-dehydrogenase -
  IE382_RS10690 (IE382_10640) kbl 2048980..2050158 (+) 1179 WP_041336018.1 glycine C-acetyltransferase -
  IE382_RS10695 (IE382_10645) miaB 2050306..2051835 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IE382_RS10700 (IE382_10650) ymcA 2051837..2052268 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  IE382_RS10705 (IE382_10655) cotE 2052530..2053075 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  IE382_RS10710 (IE382_10660) hexA 2053208..2055784 (+) 2577 WP_041336021.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=423499 IE382_RS10700 WP_003231834.1 2051837..2052268(+) (ymcA) [Bacillus subtilis strain FX-1]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=423499 IE382_RS10700 WP_003231834.1 2051837..2052268(+) (ymcA) [Bacillus subtilis strain FX-1]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1