Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   IE382_RS09715 Genome accession   NZ_CP061870
Coordinates   1849947..1850972 (+) Length   341 a.a.
NCBI ID   WP_014476730.1    Uniprot ID   -
Organism   Bacillus subtilis strain FX-1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1844947..1855972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS09680 (IE382_09630) ylbE 1845247..1845486 (+) 240 WP_003232231.1 YlbE-like family protein -
  IE382_RS09685 (IE382_09635) ylbF 1845602..1846051 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  IE382_RS09690 (IE382_09640) ylbG 1846106..1846378 (+) 273 WP_009967171.1 YlbG family protein -
  IE382_RS09695 (IE382_09645) rsmD 1846701..1847255 (+) 555 WP_017694816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IE382_RS09700 (IE382_09650) coaD 1847260..1847745 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  IE382_RS09705 (IE382_09655) spoVV 1847756..1848982 (-) 1227 WP_017694817.1 dipicolinic acid transporter SpoVV -
  IE382_RS09710 (IE382_09660) ylbK 1849163..1849945 (+) 783 WP_017694818.1 patatin family protein -
  IE382_RS09715 (IE382_09665) sepM 1849947..1850972 (+) 1026 WP_014476730.1 protease DdcP Regulator
  IE382_RS09720 (IE382_09670) ylbM 1850989..1852236 (-) 1248 WP_003244707.1 nucleotidyltransferase -
  IE382_RS09725 (IE382_09675) - 1852233..1852418 (-) 186 WP_003232215.1 hypothetical protein -
  IE382_RS09730 (IE382_09680) ylbN 1852446..1852964 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  IE382_RS09735 (IE382_09685) rpmF 1852986..1853165 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  IE382_RS09740 (IE382_09690) gerR 1853311..1853892 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  IE382_RS09745 (IE382_09695) ylbP 1853949..1854431 (-) 483 WP_014476736.1 N-acetyltransferase -
  IE382_RS09750 (IE382_09700) - 1854591..1855487 (+) 897 WP_017694819.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37652.22 Da        Isoelectric Point: 5.9932

>NTDB_id=423488 IE382_RS09715 WP_014476730.1 1849947..1850972(+) (sepM) [Bacillus subtilis strain FX-1]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSDMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=423488 IE382_RS09715 WP_014476730.1 1849947..1850972(+) (sepM) [Bacillus subtilis strain FX-1]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGTTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAGATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402