Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   IE382_RS09685 Genome accession   NZ_CP061870
Coordinates   1845602..1846051 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain FX-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1840602..1851051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE382_RS09645 (IE382_09595) ctaE 1840618..1841241 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  IE382_RS09650 (IE382_09600) ctaF 1841244..1841576 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  IE382_RS09655 (IE382_09605) ctaG 1841604..1842497 (+) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  IE382_RS09660 (IE382_09610) ylbA 1842529..1842891 (-) 363 WP_014479712.1 YugN family protein -
  IE382_RS09665 (IE382_09615) ylbB 1843031..1843477 (+) 447 WP_003221362.1 CBS domain-containing protein -
  IE382_RS09670 (IE382_09620) ylbC 1843561..1844601 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  IE382_RS09675 (IE382_09625) ylbD 1844833..1845231 (+) 399 WP_003232233.1 YlbD family protein -
  IE382_RS09680 (IE382_09630) ylbE 1845247..1845486 (+) 240 WP_003232231.1 YlbE-like family protein -
  IE382_RS09685 (IE382_09635) ylbF 1845602..1846051 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  IE382_RS09690 (IE382_09640) ylbG 1846106..1846378 (+) 273 WP_009967171.1 YlbG family protein -
  IE382_RS09695 (IE382_09645) rsmD 1846701..1847255 (+) 555 WP_017694816.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IE382_RS09700 (IE382_09650) coaD 1847260..1847745 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  IE382_RS09705 (IE382_09655) spoVV 1847756..1848982 (-) 1227 WP_017694817.1 dipicolinic acid transporter SpoVV -
  IE382_RS09710 (IE382_09660) ylbK 1849163..1849945 (+) 783 WP_017694818.1 patatin family protein -
  IE382_RS09715 (IE382_09665) sepM 1849947..1850972 (+) 1026 WP_014476730.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=423487 IE382_RS09685 WP_003221370.1 1845602..1846051(+) (ylbF) [Bacillus subtilis strain FX-1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=423487 IE382_RS09685 WP_003221370.1 1845602..1846051(+) (ylbF) [Bacillus subtilis strain FX-1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAATTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTCTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1