Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   AbD4_RS01340 Genome accession   NZ_CP048849
Coordinates   277011..278165 (-) Length   384 a.a.
NCBI ID   WP_000755280.1    Uniprot ID   A0A009S0N9
Organism   Acinetobacter baumannii strain D4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 272011..283165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AbD4_RS01320 (AbD4_00272) - 273172..273822 (+) 651 WP_012300783.1 TetR/AcrR family transcriptional regulator -
  AbD4_RS01325 (AbD4_00273) - 273928..274848 (+) 921 WP_000084546.1 DMT family transporter -
  AbD4_RS01330 (AbD4_00274) - 275240..275809 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  AbD4_RS01335 (AbD4_00275) dprA 275860..276990 (-) 1131 WP_002009557.1 DNA-processing protein DprA Machinery gene
  AbD4_RS01340 (AbD4_00276) tsaP 277011..278165 (-) 1155 WP_000755280.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  AbD4_RS01345 (AbD4_00277) def 278288..278818 (+) 531 WP_001196539.1 peptide deformylase -
  AbD4_RS01350 - 278855..279283 (+) 429 WP_000231981.1 DUF2946 family protein -
  AbD4_RS01355 (AbD4_00279) - 279356..281437 (+) 2082 WP_001120682.1 TonB-dependent copper receptor -
  AbD4_RS01360 (AbD4_00280) - 281487..281693 (+) 207 WP_000182542.1 hypothetical protein -
  AbD4_RS01365 (AbD4_00281) - 281763..282977 (-) 1215 WP_001177956.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42334.28 Da        Isoelectric Point: 8.5909

>NTDB_id=423482 AbD4_RS01340 WP_000755280.1 277011..278165(-) (tsaP) [Acinetobacter baumannii strain D4]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAFVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=423482 AbD4_RS01340 WP_000755280.1 277011..278165(-) (tsaP) [Acinetobacter baumannii strain D4]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCAGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGATTCAATTACCAACACACCTTATATTGTTGGTACCGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAACTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGCTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGATCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTGATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTTTGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009S0N9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.219

100

0.992