Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G4D54_RS12505 Genome accession   NZ_CP048838
Coordinates   2581835..2582296 (+) Length   153 a.a.
NCBI ID   WP_008729107.1    Uniprot ID   -
Organism   [Clostridium] innocuum strain ATCC 14501     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2576835..2587296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D54_RS12475 (G4D54_12475) - 2578042..2579178 (+) 1137 WP_002611896.1 hypothetical protein -
  G4D54_RS12480 (G4D54_12480) - 2579198..2579548 (+) 351 WP_002611897.1 hypothetical protein -
  G4D54_RS12485 (G4D54_12485) - 2579888..2580742 (+) 855 WP_109771457.1 hypothetical protein -
  G4D54_RS12490 (G4D54_12490) - 2580748..2581020 (+) 273 WP_002611900.1 hypothetical protein -
  G4D54_RS12495 (G4D54_12495) - 2580995..2581480 (+) 486 WP_117445023.1 class I SAM-dependent methyltransferase -
  G4D54_RS12505 (G4D54_12505) ssb 2581835..2582296 (+) 462 WP_008729107.1 single-stranded DNA-binding protein Machinery gene
  G4D54_RS12510 (G4D54_12510) - 2582314..2582850 (+) 537 WP_038274772.1 NUMOD4 domain-containing protein -
  G4D54_RS12515 (G4D54_12515) - 2582897..2583571 (+) 675 WP_008729102.1 hypothetical protein -
  G4D54_RS12520 (G4D54_12520) - 2583658..2584029 (+) 372 WP_002611238.1 hypothetical protein -
  G4D54_RS12525 (G4D54_12525) - 2584120..2584341 (+) 222 WP_038274694.1 hypothetical protein -
  G4D54_RS12530 (G4D54_12530) - 2584345..2584599 (+) 255 WP_002611232.1 hypothetical protein -
  G4D54_RS12535 (G4D54_12535) - 2584596..2585087 (+) 492 WP_002611230.1 hypothetical protein -
  G4D54_RS12540 (G4D54_12540) - 2585135..2585437 (+) 303 WP_233109008.1 hypothetical protein -
  G4D54_RS12545 (G4D54_12545) - 2585515..2585652 (+) 138 WP_002611501.1 hypothetical protein -
  G4D54_RS12550 (G4D54_12550) - 2585837..2586463 (+) 627 WP_002611226.1 hypothetical protein -
  G4D54_RS12555 (G4D54_12555) - 2586613..2586774 (+) 162 WP_002611225.1 hypothetical protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16846.78 Da        Isoelectric Point: 5.7628

>NTDB_id=423474 G4D54_RS12505 WP_008729107.1 2581835..2582296(+) (ssb) [[Clostridium] innocuum strain ATCC 14501]
MINRVVLVGRLTKDPVLRKTTNGASVVSFTVACNRLFKQEGQPEADFINTVVWNKTADSVEKYTHKGSLVGVEGRIQTRS
YDDKDCKRVYVTEVVADNVRFLDSRKAGGTDHAYVPGQESTQSITTMSNSTPSFSSEFTSTAALDISDDDLPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=423474 G4D54_RS12505 WP_008729107.1 2581835..2582296(+) (ssb) [[Clostridium] innocuum strain ATCC 14501]
ATGATCAATAGAGTTGTATTAGTGGGAAGATTGACGAAGGACCCTGTATTACGGAAGACGACGAATGGCGCATCGGTCGT
GTCTTTTACGGTCGCATGCAACCGGCTTTTCAAACAGGAGGGACAGCCGGAAGCTGACTTCATCAACACTGTCGTCTGGA
ACAAGACCGCAGACAGTGTAGAGAAGTATACGCACAAGGGCTCTCTGGTAGGTGTAGAGGGCCGTATCCAGACGCGCAGC
TATGATGACAAGGATTGCAAGCGTGTATATGTAACAGAGGTGGTCGCGGATAATGTGCGCTTTCTGGACAGCCGGAAAGC
AGGAGGTACGGATCATGCTTACGTACCCGGACAGGAAAGCACACAGAGCATCACCACTATGAGCAACAGCACTCCGTCCT
TCTCCAGTGAGTTCACAAGCACTGCAGCATTGGATATCTCCGATGACGATCTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

47.059

100

0.523
  ssbA Bacillus subtilis subsp. subtilis str. 168

42.857

100

0.49
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

69.281

0.399