Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   G4G71_RS20210 Genome accession   NZ_CP048833
Coordinates   4456211..4456846 (-) Length   211 a.a.
NCBI ID   WP_017519262.1    Uniprot ID   A0A1B8V541
Organism   Pseudomonas multiresinivorans strain populi     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4451211..4461846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G71_RS20180 (G4G71_20135) murB 4452274..4453293 (-) 1020 WP_169939722.1 UDP-N-acetylmuramate dehydrogenase -
  G4G71_RS20185 (G4G71_20140) - 4453290..4453754 (-) 465 WP_169939723.1 low molecular weight protein-tyrosine-phosphatase -
  G4G71_RS20190 (G4G71_20145) kdsB 4453754..4454518 (-) 765 WP_065084902.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  G4G71_RS20195 (G4G71_20150) - 4454523..4454708 (-) 186 WP_009621404.1 Trm112 family protein -
  G4G71_RS20200 (G4G71_20155) lpxK 4454767..4455765 (-) 999 WP_169939724.1 tetraacyldisaccharide 4'-kinase -
  G4G71_RS20205 (G4G71_20160) - 4455765..4456214 (-) 450 WP_045211644.1 ExbD/TolR family protein -
  G4G71_RS20210 (G4G71_20165) exbB 4456211..4456846 (-) 636 WP_017519262.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  G4G71_RS20215 (G4G71_20170) comA 4456918..4459128 (-) 2211 WP_169942735.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  G4G71_RS20220 (G4G71_20175) - 4459291..4459821 (+) 531 WP_169939725.1 DUF2062 domain-containing protein -
  G4G71_RS20225 (G4G71_20180) - 4459970..4461217 (-) 1248 WP_169939726.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22953.24 Da        Isoelectric Point: 7.2806

>NTDB_id=423405 G4G71_RS20210 WP_017519262.1 4456211..4456846(-) (exbB) [Pseudomonas multiresinivorans strain populi]
MWELVKAGGWMMLPILLSSVAAMAIVAERLWTLRLSRVAPPQLLGQVWKQIKDKKMNSQALKDLRASSPLGEILAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFSAFMGDGMANAPMLAGGISKALITTAA
GLIVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVTQGDREVDFVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=423405 G4G71_RS20210 WP_017519262.1 4456211..4456846(-) (exbB) [Pseudomonas multiresinivorans strain populi]
GTGTGGGAACTGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCTTGCTGAGCTCCGTCGCTGCCATGGCGATCGTCGC
CGAACGTCTCTGGACCCTGCGCTTGAGCCGCGTGGCCCCGCCGCAGTTGCTCGGCCAGGTGTGGAAGCAGATCAAGGACA
AGAAGATGAACAGCCAGGCCCTGAAGGACCTGCGCGCGTCTTCCCCGCTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAT
TCCAAGCACGGCCGCGAAATCATGAAGGAGTGCATCGAGGAGGCCGCGTCCCGGGTGATCCACGAACTGGAACGCTACCT
CAACGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTCGGCCTGCTGGGTACCGTGTTCGGCATGATCCAGATCTTCA
GCGCCTTCATGGGCGACGGCATGGCCAACGCGCCTATGCTTGCCGGCGGTATCTCCAAGGCCCTGATCACCACTGCGGCC
GGCCTGATCGTGGCGATCCCGGCAGTGTTCTTCCACCGTTACCTGCTGCGCCGCGTCGATGAGTTGGTCATCGCCATGGA
GCAGGAAGCCATCAAGCTGGTGGAAGTGACCCAGGGCGACCGCGAAGTCGACTTCGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8V541

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment