Detailed information NTG0423376

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: G3257_RS05920
• Genome accession: NZ_CP048832
• Coordinates: 1316887..1317756 (-)
• Length: 289 a.a.
• NCBI ID: WP_176374740.1
• Uniprot ID: -
• Organism: Janthinobacterium lividum strain EIF1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1311887..1322756

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3257_RS05880 (G3257_05865)	argJ	1311888..1313126 (+)	1239	WP_034784989.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
G3257_RS05885 (G3257_05870)	-	1313123..1314004 (+)	882	WP_176374737.1	ATP-binding protein	-
G3257_RS05890 (G3257_05875)	-	1314001..1314423 (+)	423	WP_070258873.1	NUDIX domain-containing protein	-
G3257_RS05895 (G3257_05880)	-	1314544..1314753 (+)	210	WP_034784992.1	hypothetical protein	-
G3257_RS05900 (G3257_05885)	-	1314757..1315173 (+)	417	WP_176374738.1	VapC toxin family PIN domain ribonuclease	-
G3257_RS05905 (G3257_05890)	yacG	1315177..1315368 (-)	192	WP_034785391.1	DNA gyrase inhibitor YacG	-
G3257_RS05910 (G3257_05895)	zapD	1315387..1316142 (-)	756	WP_034748811.1	cell division protein ZapD	-
G3257_RS05915 (G3257_05900)	coaE	1316205..1316852 (-)	648	WP_176374739.1	dephospho-CoA kinase	-
G3257_RS05920 (G3257_05905)	pilD	1316887..1317756 (-)	870	WP_176374740.1	A24 family peptidase	Machinery gene
G3257_RS05925 (G3257_05910)	-	1317862..1319058 (-)	1197	WP_176374741.1	type II secretion system F family protein	-
G3257_RS05930 (G3257_05915)	-	1319132..1320604 (-)	1473	WP_244965394.1	DHA2 family efflux MFS transporter permease subunit	-
G3257_RS05935 (G3257_05920)	-	1320811..1321965 (+)	1155	WP_176374742.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31026.82 Da
• Isoelectric Point: 7.3207

>NTDB_id=423376 G3257_RS05920 WP_176374740.1 1316887..1317756(-) (pilD) [Janthinobacterium lividum strain EIF1]
MLQDTLLFAAPGNLPVTLVAALFGLIVGSFLNVVIHRVPKMMQRESDNYVAEESGLPLPHTDRYNLMLPHSNCTACGHRI
TAMENIPVISYLLLRGKCSACQAPISVRYPLVELLTGALSALLVWHFGSGWTGLATLVFAWLLIAMTFIDADTQMLPDDL
TFPLLWAGLLININGTFVPLQDAVIGAAAGYLALWGVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSLV
GAVVGIGLIVFAKRGRDKPIPFGPYLAAAGLIALLYGTPLSRLTLGLTS

Nucleotide

• Length: 870 bp

>NTDB_id=423376 G3257_RS05920 WP_176374740.1 1316887..1317756(-) (pilD) [Janthinobacterium lividum strain EIF1]
ATGCTGCAAGATACCCTGCTGTTCGCCGCGCCCGGCAACCTGCCCGTCACCCTCGTCGCCGCCCTGTTCGGCCTGATCGT
CGGCAGCTTCCTGAATGTGGTGATCCACCGCGTGCCGAAAATGATGCAGCGCGAATCCGATAATTACGTGGCGGAAGAAA
GCGGCTTGCCCTTGCCGCACACGGACCGCTACAACCTGATGCTGCCGCACTCGAACTGCACCGCTTGCGGCCACCGCATC
ACGGCCATGGAAAACATCCCCGTCATCAGTTACCTGCTGCTGCGCGGCAAATGCAGCGCCTGCCAGGCGCCGATCTCCGT
GCGCTATCCGCTGGTCGAACTGCTGACGGGCGCCCTGTCGGCCCTTCTGGTCTGGCACTTCGGCAGCGGCTGGACGGGTC
TCGCCACCCTCGTGTTTGCCTGGCTGCTGATCGCCATGACCTTCATAGACGCCGATACGCAAATGCTGCCCGACGATCTC
ACCTTTCCCCTGCTGTGGGCGGGCCTGCTGATCAATATCAATGGCACCTTCGTGCCCCTGCAAGACGCCGTCATCGGCGC
GGCCGCCGGCTACCTGGCCCTGTGGGGCGTGTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAGGGAATGGGCTATGGTG
ACTTCAAATTACTGGCGGCGCTCGGTGCGTGGCTGGGCTGGACGATGCTGCCGACGATCATATTATTGTCATCGCTGGTC
GGCGCCGTGGTCGGCATCGGGCTGATCGTGTTTGCCAAGCGCGGGCGCGACAAACCGATTCCGTTCGGTCCCTACCTGGC
GGCGGCCGGTCTGATCGCGCTGCTGTACGGCACGCCCCTGTCGCGCCTCACACTGGGCCTGACCAGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.797	95.502	0.533
pilD	Vibrio campbellii strain DS40M4	56.489	90.657	0.512
pilD	Acinetobacter baumannii D1279779	48.789	100	0.488
pilD	Acinetobacter nosocomialis M2	47.751	100	0.478
pilD	Neisseria gonorrhoeae MS11	53.516	88.581	0.474