Detailed information NTG0423376

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BAMOH1_RS13325
• Genome accession: NZ_CP061853
• Coordinates: 2780740..2781873 (-)
• Length: 377 a.a.
• NCBI ID: WP_014418617.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MOH1-5b
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2775740..2786873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMOH1_RS13305 (BAMOH1_13305)	mdh	2776346..2777284 (-)	939	WP_003152455.1	malate dehydrogenase	-
BAMOH1_RS13310 (BAMOH1_13310)	icd	2777330..2778601 (-)	1272	WP_007408075.1	NADP-dependent isocitrate dehydrogenase	-
BAMOH1_RS13315 (BAMOH1_13315)	citZ	2778762..2779880 (-)	1119	WP_017418343.1	citrate synthase	-
BAMOH1_RS13320 (BAMOH1_13320)	-	2780598..2780750 (-)	153	WP_017418344.1	hypothetical protein	-
BAMOH1_RS13325 (BAMOH1_13325)	rapC	2780740..2781873 (-)	1134	WP_014418617.1	Rap family tetratricopeptide repeat protein	Regulator
BAMOH1_RS13330 (BAMOH1_13330)	-	2782166..2782603 (-)	438	WP_014418618.1	hypothetical protein	-
BAMOH1_RS13335 (BAMOH1_13335)	-	2782760..2782894 (-)	135	Protein_2604	peptidoglycan-binding protein	-
BAMOH1_RS13340 (BAMOH1_13340)	-	2783079..2783489 (-)	411	WP_017418345.1	YjdF family protein	-
BAMOH1_RS13345 (BAMOH1_13345)	-	2783910..2784374 (-)	465	WP_003152447.1	DUF441 domain-containing protein	-
BAMOH1_RS13350 (BAMOH1_13350)	ytvI	2784472..2785587 (+)	1116	WP_021494434.1	sporulation integral membrane protein YtvI	-
BAMOH1_RS13355 (BAMOH1_13355)	-	2785619..2786002 (-)	384	WP_012118168.1	FxsA family protein	-

Sequence

Protein

• Length: 377 a.a.
• Molecular weight: 44826.60 Da
• Isoelectric Point: 5.9708

>NTDB_id=423376 BAMOH1_RS13325 WP_014418617.1 2780740..2781873(-) (rapC) [Bacillus amyloliquefaciens strain MOH1-5b]
MDQVLPSSHVGVKINEWYKMIRQFSVPDAEILKAEVEHEIKEMEEDEYLLIYYSLMTFRHQLMLDYLNPEIKYRTDRPTT
TELLEKIEKPQKTLTGLLKYYSHFFRGMYEFDQKQYVEAINFYRKAEMEIHHVSDEIEQAEFHFKLAEAYYNMKQTHVSM
HHILKALEIYDRNPLYTVRKIQSLFVIVGNYLDFKHYEKGLQHLEEALKLSQEFGHKRLISSALYNLGESYHYMGQEEKA
EAYLRQAIVIGEEMKLRTLPHSYYSLSIVLFKQKKTAAAGQALKEGLKTAVKYDDNLFCLLTEFLYVLFAEPINKDSLVE
ILSKLENIHMYSYVEELTLLTANFFKGMKDFEMATIFYDKMVESQLQIQRGDCLYEY

Nucleotide

• Length: 1134 bp

>NTDB_id=423376 BAMOH1_RS13325 WP_014418617.1 2780740..2781873(-) (rapC) [Bacillus amyloliquefaciens strain MOH1-5b]
ATGGACCAGGTATTACCGTCTTCACATGTAGGCGTTAAAATTAACGAGTGGTACAAGATGATTCGTCAATTTAGTGTGCC
AGACGCGGAAATTTTAAAAGCCGAAGTGGAACACGAAATAAAAGAAATGGAAGAAGACGAATATTTACTTATTTATTACT
CTCTCATGACTTTTCGTCATCAACTTATGCTAGATTATTTAAACCCAGAAATAAAGTATAGGACTGATAGGCCAACCACC
ACAGAACTACTTGAGAAGATTGAGAAACCACAAAAAACACTTACCGGCCTCTTAAAATATTACTCACATTTTTTTCGCGG
AATGTACGAATTTGATCAGAAGCAGTATGTAGAAGCAATTAATTTTTATCGTAAAGCAGAGATGGAAATTCATCATGTCT
CTGATGAAATAGAACAAGCTGAGTTTCATTTTAAGTTGGCAGAGGCTTATTATAATATGAAACAAACGCACGTATCCATG
CATCATATTCTAAAAGCGTTAGAAATTTATGATCGAAACCCGCTTTATACCGTCCGAAAAATTCAAAGTTTATTTGTAAT
TGTGGGTAATTATCTTGATTTTAAACATTACGAAAAAGGATTACAGCATCTTGAGGAAGCCTTGAAGCTTTCGCAAGAAT
TTGGTCATAAAAGGTTGATTTCCTCTGCTCTTTATAATTTGGGTGAAAGTTATCACTACATGGGACAAGAAGAAAAGGCC
GAAGCGTATTTGAGACAAGCAATTGTGATTGGTGAAGAAATGAAATTGAGAACTCTGCCCCATTCATATTATTCACTTTC
CATAGTATTATTTAAGCAAAAGAAAACAGCCGCGGCAGGCCAAGCTTTAAAAGAAGGTTTAAAAACAGCAGTAAAATATG
ACGACAATTTGTTTTGCTTATTAACAGAGTTTTTATATGTTTTATTTGCTGAACCGATTAACAAAGACAGCCTTGTAGAA
ATTTTAAGTAAGCTTGAAAATATTCATATGTATTCGTATGTCGAAGAGTTGACACTTTTAACAGCAAACTTTTTCAAAGG
AATGAAGGACTTTGAAATGGCTACAATTTTTTATGATAAGATGGTGGAGTCTCAACTTCAAATACAGCGGGGGGATTGTT
TGTATGAATATTAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (197-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	42.133	99.469	0.419
rapF	Bacillus subtilis subsp. subtilis str. 168	38.889	100	0.39