Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   G3R47_RS16760 Genome accession   NZ_CP048827
Coordinates   3477840..3478313 (-) Length   157 a.a.
NCBI ID   WP_001214068.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABF9692     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3472840..3483313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R47_RS16745 (G3R47_16715) pilX 3475469..3476287 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  G3R47_RS16750 (G3R47_16720) pilW 3476284..3477285 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  G3R47_RS16755 (G3R47_16725) pilV 3477286..3477846 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  G3R47_RS16760 (G3R47_16730) fimU 3477840..3478313 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G3R47_RS16765 (G3R47_16735) ispH 3478483..3479433 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  G3R47_RS16770 (G3R47_16740) gmk 3479556..3480185 (+) 630 WP_000015937.1 guanylate kinase -
  G3R47_RS16775 (G3R47_16745) rpoZ 3480258..3480536 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  G3R47_RS16780 (G3R47_16750) - 3480575..3480705 (+) 131 Protein_3280 hypothetical protein -
  G3R47_RS16785 (G3R47_16755) - 3480745..3482850 (+) 2106 WP_169538872.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16851.46 Da        Isoelectric Point: 8.5355

>NTDB_id=423341 G3R47_RS16760 WP_001214068.1 3477840..3478313(-) (fimU) [Acinetobacter baumannii strain ABF9692]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=423341 G3R47_RS16760 WP_001214068.1 3477840..3478313(-) (fimU) [Acinetobacter baumannii strain ABF9692]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment