Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   G3R47_RS16745 Genome accession   NZ_CP048827
Coordinates   3475469..3476287 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain ABF9692     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3470469..3481287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R47_RS16730 (G3R47_16700) pilE 3470686..3471111 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  G3R47_RS16735 (G3R47_16705) pilY2 3471108..3471590 (-) 483 WP_001046421.1 type IV pilin protein Machinery gene
  G3R47_RS16740 (G3R47_16710) pilY1 3471603..3475457 (-) 3855 WP_020753491.1 PilC/PilY family type IV pilus protein Machinery gene
  G3R47_RS16745 (G3R47_16715) pilX 3475469..3476287 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  G3R47_RS16750 (G3R47_16720) pilW 3476284..3477285 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  G3R47_RS16755 (G3R47_16725) pilV 3477286..3477846 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  G3R47_RS16760 (G3R47_16730) fimU 3477840..3478313 (-) 474 WP_001214068.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  G3R47_RS16765 (G3R47_16735) ispH 3478483..3479433 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  G3R47_RS16770 (G3R47_16740) gmk 3479556..3480185 (+) 630 WP_000015937.1 guanylate kinase -
  G3R47_RS16775 (G3R47_16745) rpoZ 3480258..3480536 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  G3R47_RS16780 (G3R47_16750) - 3480575..3480705 (+) 131 Protein_3280 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=423338 G3R47_RS16745 WP_000149374.1 3475469..3476287(-) (pilX) [Acinetobacter baumannii strain ABF9692]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=423338 G3R47_RS16745 WP_000149374.1 3475469..3476287(-) (pilX) [Acinetobacter baumannii strain ABF9692]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment