Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   BAMOH1_RS08585 Genome accession   NZ_CP061853
Coordinates   1721921..1723795 (+) Length   624 a.a.
NCBI ID   WP_014417807.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MOH1-5b     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1716921..1728795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMOH1_RS08570 (BAMOH1_08570) ymcA 1717972..1718403 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  BAMOH1_RS08575 (BAMOH1_08575) cotE 1718656..1719201 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  BAMOH1_RS08580 (BAMOH1_08580) hexA 1719320..1721905 (+) 2586 WP_053285095.1 DNA mismatch repair protein MutS Machinery gene
  BAMOH1_RS08585 (BAMOH1_08585) hexB 1721921..1723795 (+) 1875 WP_014417807.1 DNA mismatch repair endonuclease MutL Machinery gene
  BAMOH1_RS19380 - 1723848..1723973 (+) 126 Protein_1655 ArpU family transcriptional regulator -
  BAMOH1_RS08590 (BAMOH1_08590) - 1723975..1724516 (+) 542 Protein_1656 tyrosine-type recombinase/integrase -
  BAMOH1_RS08595 (BAMOH1_08595) - 1725004..1725192 (+) 189 WP_053284987.1 hypothetical protein -
  BAMOH1_RS08600 (BAMOH1_08600) - 1725355..1725906 (+) 552 WP_123117829.1 hypothetical protein -
  BAMOH1_RS08605 (BAMOH1_08605) - 1726024..1726839 (-) 816 WP_160182671.1 hypothetical protein -
  BAMOH1_RS08610 (BAMOH1_08610) - 1727132..1727341 (-) 210 WP_160182672.1 hypothetical protein -
  BAMOH1_RS08615 (BAMOH1_08615) - 1727985..1728662 (+) 678 WP_160182673.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 70144.35 Da        Isoelectric Point: 5.9381

>NTDB_id=423337 BAMOH1_RS08585 WP_014417807.1 1721921..1723795(+) (hexB) [Bacillus amyloliquefaciens strain MOH1-5b]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKSAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPVIIEEEILPNEADH
EVPPELGMAETAAPVSDTPEPEAVSEEIREERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQVE
PEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKKL
REEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=423337 BAMOH1_RS08585 WP_014417807.1 1721921..1723795(+) (hexB) [Bacillus amyloliquefaciens strain MOH1-5b]
TTGGCAAAAGTCATCCAGCTCTCAGATGAACTTTCAAATAAAATAGCGGCCGGCGAGGTAGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATCGACGCAAACAGTACAGTCATTGAAATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGGATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGCACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAAC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAACCTGTTTTTCAATACACCCGCCAGATTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTTGTTAACCGGATCGCTCTTGCGCATCCGGAAGTATCGATCCG
TCTCCGTCATCAGGGGAAAAATCTGCTGCAGACAAACGGTAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATTGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TCGATGTCAATGTACATCCCTCAAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTCCCGAAAAAATCAGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTCGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAGCCGTCTTACTCAC
CAATGAAGCTGAGTTCGGTCGTAAAAGAGCCTGAGCCGGTAATAATAGAAGAAGAGATTCTCCCGAATGAAGCGGATCAC
GAAGTGCCGCCGGAGCTCGGCATGGCGGAAACGGCAGCGCCTGTTTCCGATACTCCGGAACCGGAAGCTGTCTCTGAAGA
AATACGGGAAGAAAGAGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCCCAAAACGAAAACG
GCTTGTATATCATTGACCAGCATGCGGCACAAGAACGGATTAAATACGAATATTTCCGGGAGAAAGTCGGGCAGGTCGAG
CCTGAAGTACAGGACATGATCGTGCCGCTCACCTTTCATTACGCGGCAAACGAAGCGCTGATCATTGACCAGCATCAGCA
TGAGCTTGAAAGTGTCGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTCCGCTGCCATCCGGCCTGGTTTC
CAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAGCAGATCGATATTAAGAAACTG
CGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGCCATTTGCGAAACGACGAAATCAAAGC
GCTCTTGGACGACCTGCGCCGAACGACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATCCACCACAGCACGT
ATGAGATGGAGAAGATGTTTAAGCGTGTGATGTAG

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(439-580)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.512

100

0.481

Multiple sequence alignment