Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   BAMOH1_RS08570 Genome accession   NZ_CP061853
Coordinates   1717972..1718403 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain MOH1-5b     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712972..1723403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMOH1_RS08550 (BAMOH1_08550) spoVS 1713543..1713803 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  BAMOH1_RS08555 (BAMOH1_08555) tdh 1714060..1715106 (+) 1047 WP_128496638.1 L-threonine 3-dehydrogenase -
  BAMOH1_RS08560 (BAMOH1_08560) - 1715119..1716297 (+) 1179 WP_029325912.1 glycine C-acetyltransferase -
  BAMOH1_RS08565 (BAMOH1_08565) miaB 1716440..1717969 (+) 1530 WP_003154116.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  BAMOH1_RS08570 (BAMOH1_08570) ymcA 1717972..1718403 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  BAMOH1_RS08575 (BAMOH1_08575) cotE 1718656..1719201 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  BAMOH1_RS08580 (BAMOH1_08580) hexA 1719320..1721905 (+) 2586 WP_053285095.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=423335 BAMOH1_RS08570 WP_003154113.1 1717972..1718403(+) (ymcA) [Bacillus amyloliquefaciens strain MOH1-5b]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=423335 BAMOH1_RS08570 WP_003154113.1 1717972..1718403(+) (ymcA) [Bacillus amyloliquefaciens strain MOH1-5b]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCTGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916

Multiple sequence alignment