Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   GN234_RS16050 Genome accession   NZ_CP048810
Coordinates   3670930..3673017 (-) Length   695 a.a.
NCBI ID   WP_116833986.1    Uniprot ID   -
Organism   Pseudomonas bijieensis strain L22-9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3665930..3678017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GN234_RS16035 (GN234_15975) - 3667564..3669147 (-) 1584 WP_176688758.1 AAA family ATPase -
  GN234_RS16040 (GN234_15980) aroB 3669158..3670258 (-) 1101 WP_109752042.1 3-dehydroquinate synthase -
  GN234_RS16045 (GN234_15985) aroK 3670407..3670925 (-) 519 WP_003196983.1 shikimate kinase AroK -
  GN234_RS16050 (GN234_15990) pilQ 3670930..3673017 (-) 2088 WP_116833986.1 type IV pilus secretin PilQ Machinery gene
  GN234_RS16055 (GN234_15995) - 3673031..3673558 (-) 528 WP_109752040.1 pilus assembly protein PilP -
  GN234_RS16060 (GN234_16000) pilO 3673555..3674178 (-) 624 WP_109752039.1 type 4a pilus biogenesis protein PilO -
  GN234_RS16065 (GN234_16005) - 3674175..3674741 (-) 567 WP_109752038.1 PilN domain-containing protein -
  GN234_RS16070 (GN234_16010) comM 3674741..3675805 (-) 1065 WP_109752037.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 75025.12 Da        Isoelectric Point: 5.5467

>NTDB_id=423156 GN234_RS16050 WP_116833986.1 3670930..3673017(-) (pilQ) [Pseudomonas bijieensis strain L22-9]
MNRIFSALGISLWIALLSPMVHGASLKTLDVAALPGDRVELKLTFDGPPPTPRGYTTEQPARIALDLPGVTNQLASKNHD
LGGGNARSATVVEAGDRTRLIIGLTQLAPYDTRVEGNHLFVVVGKGGSAKSAAAKNTVQAPRTAVASAAPARASAPVGKA
IRGVDFQRGTQGEGNVVIDLSDPSIAPDIQEREGKIILNFARTQLPEPLRVRLDVKDFATPVQFVNASAGSDRATISIEP
SGTFDYSTYQTDNKLTVSVRPMTVDDLQKRNADRAAYSGEKLSLNFQDIEVRSVLQLIADFTNLNLVASDTVQGGITLRL
QNVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFQSVTSA
EAKADERGTITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSG
VTTGDSTTIGTPGSTSTNQPFVDMGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTE
IPYQEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGV
FSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=423156 GN234_RS16050 WP_116833986.1 3670930..3673017(-) (pilQ) [Pseudomonas bijieensis strain L22-9]
ATGAACAGGATTTTTTCAGCCCTCGGTATTTCGCTATGGATAGCGCTGTTGTCGCCGATGGTTCATGGGGCCAGTCTGAA
GACGCTGGATGTGGCGGCGTTGCCGGGAGACCGTGTCGAGTTGAAGCTTACCTTCGATGGTCCGCCGCCGACTCCTCGGG
GCTACACCACCGAACAACCGGCCCGGATTGCCCTGGACCTGCCCGGGGTGACCAATCAACTGGCCAGCAAGAACCACGAC
CTGGGCGGGGGCAATGCACGCAGCGCCACCGTGGTCGAGGCCGGGGATCGCACCCGGTTGATCATCGGCCTTACCCAACT
GGCGCCGTACGATACCCGGGTCGAAGGTAACCATCTGTTCGTGGTGGTCGGCAAGGGGGGCTCTGCGAAGAGCGCTGCTG
CGAAGAACACCGTCCAGGCCCCGCGCACGGCGGTTGCCAGCGCGGCGCCCGCGAGGGCCAGTGCGCCAGTGGGCAAGGCG
ATCCGTGGGGTTGACTTCCAGCGTGGGACCCAGGGCGAAGGCAACGTGGTAATTGATCTGTCTGATCCGTCCATCGCCCC
GGACATCCAGGAGCGCGAAGGCAAGATCATCCTCAATTTCGCCAGGACCCAGTTGCCCGAGCCATTGCGGGTGCGCCTGG
ACGTCAAGGACTTCGCCACCCCGGTGCAGTTCGTCAATGCCAGCGCCGGCAGCGACCGGGCGACCATCAGCATCGAACCC
AGCGGCACCTTCGACTACTCGACCTACCAGACCGACAACAAGCTCACCGTCAGCGTCCGTCCCATGACCGTCGACGACCT
GCAAAAACGCAACGCCGACCGCGCGGCCTACAGTGGCGAGAAGCTCTCGCTCAACTTCCAGGACATCGAGGTGCGCTCGG
TGCTGCAATTGATCGCCGATTTCACCAACCTGAACCTGGTGGCCAGCGACACGGTGCAGGGCGGCATCACCCTGCGCTTG
CAGAACGTGCCTTGGGACCAGGCGCTGGATCTGGTGCTCAAGACCAAGGGTCTGGACAAGCGCAAGGTCGGCAACGTGCT
GCTGGTGGCTCCGGCCGATGAAATTGCCGCTCGCGAGCGCCAGGAGCTGGAGTCGCAGAAGCAGATTGCCGACCTGGCAC
CACTGCGGCGTGAGCTGTTGCAGGTCAACTACGCCAAGGCGGCGGACATCGCCAAGCTGTTCCAGTCGGTGACCAGTGCC
GAGGCGAAAGCCGACGAGCGCGGCACGATCACGGTCGATGAGCGCACCAACAACATCATTGCCTACCAGACCCAGGACCG
GCTCGACGAACTGCGCAGGATCGTGGCGCAACTGGATATTCCGGTGCGCCAGGTGATGATCGAGGCGCGGATTGTCGAGG
CCAACGTCGACTACGACAAAAGCCTGGGTGTGCGCTGGGGTGGGTCGATTCAGAACAAGGGCAACTGGAACACCTCAGGG
GTGACCACCGGCGATTCCACCACCATTGGCACGCCAGGCAGCACCAGCACCAACCAGCCGTTCGTCGACATGGGGGCCTC
GGGCAATACCTCGGGCATCGGCATTGCGTTCATTACCGACAACGTCTTGCTGGACCTTGAACTGACGGCCATGGAAAAGA
CCGGCAACGGCGAAATCGTCTCCCAGCCCAAGGTGGTGACCTCCGACAAGGAGACGGCAAAAATCCTCAAGGGCACGGAA
ATCCCTTATCAGGAAGCCAGTTCCAGCGGTGCCACGTCGGTGTCGTTCAAGGAGGCTTCGCTGTCGCTGGAGGTGACTCC
GCAGATCACCCCGGACAACCGCATCATCATGGAGGTCAAAGTCACCAAGGATGAACCGGACTACTTGAACAAGGTGCAGG
ATGTGCCGCCAATCAAGAAAAACGAGGTCAACGCCAAGGTCTTGGTCAATGACGGCGAGACCATTGTGATTGGCGGGGTT
TTCTCAAATACTCAGAGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCG
TGATGTAGTCTCGGAGAAAAAATCCGAGCTGCTGGTGTTCCTCACTCCGCGTATCATGAACAACCAGGCGATTGCTGTGA
GTCGTTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-122)

Bacterial type II and III secretion system protein (Secretin)

(530-686)

Secretin and TonB N terminus short domain (STN)

(305-351)

Bacterial type II/III secretion system short domain (Secretin_N)

(379-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.587

100

0.747
  comQ Acinetobacter baylyi ADP1

41.379

100

0.414
  pilQ Acinetobacter baumannii strain A118

38.389

100

0.412
  pilQ Acinetobacter baumannii D1279779

38.389

100

0.412
  pilQ Legionella pneumophila strain Lp02

38.382

97.842

0.376
  pilQ Legionella pneumophila strain ERS1305867

38.405

97.41

0.374

Multiple sequence alignment