Detailed information NTG0423124

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: G4I41_RS21790
• Genome accession: NZ_CP048800
• Coordinates: 4394560..4395360 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain EGKP4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4389560..4400360

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G4I41_RS21755 (G4I41_22075)	gspH	4389716..4390231 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
G4I41_RS21760 (G4I41_22080)	gspI	4390228..4390593 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
G4I41_RS21765 (G4I41_22085)	gspJ	4390590..4391186 (+)	597	WP_023302298.1	type II secretion system minor pseudopilin GspJ	-
G4I41_RS21770 (G4I41_22090)	gspK	4391183..4392169 (+)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
G4I41_RS21775 (G4I41_22095)	gspL	4392156..4393349 (+)	1194	WP_029498035.1	type II secretion system protein GspL	-
G4I41_RS21780 (G4I41_22100)	-	4393342..4393827 (+)	486	WP_004145896.1	type II secretion system protein M	-
G4I41_RS21785 (G4I41_22105)	-	4393817..4394563 (+)	747	WP_004145897.1	type II secretion system protein N	-
G4I41_RS21790 (G4I41_22110)	pilD	4394560..4395360 (+)	801	WP_004145898.1	prepilin peptidase	Machinery gene
G4I41_RS21795 (G4I41_22115)	hrpB	4395408..4397837 (-)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
G4I41_RS21800 (G4I41_22120)	thpR	4397910..4398446 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
G4I41_RS21805 (G4I41_22125)	sfsA	4398446..4399162 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
G4I41_RS21810 (G4I41_22130)	dksA	4399325..4399780 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=423124 G4I41_RS21790 WP_004145898.1 4394560..4395360(+) (pilD) [Klebsiella pneumoniae strain EGKP4]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=423124 G4I41_RS21790 WP_004145898.1 4394560..4395360(+) (pilD) [Klebsiella pneumoniae strain EGKP4]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425