Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   G3T50_RS07275 Genome accession   NZ_CP048771
Coordinates   1401840..1403252 (-) Length   470 a.a.
NCBI ID   WP_044260333.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS007     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1396840..1408252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T50_RS07250 (G3T50_07220) - 1397164..1397928 (+) 765 WP_002855821.1 TSUP family transporter -
  G3T50_RS07255 (G3T50_07225) ctsF 1397921..1399102 (-) 1182 WP_002880441.1 type II secretion system F family protein Machinery gene
  G3T50_RS07260 (G3T50_07230) ctsE 1399099..1400658 (-) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  G3T50_RS07265 (G3T50_07235) ctsX 1400648..1401235 (-) 588 WP_126211804.1 transformation system protein Machinery gene
  G3T50_RS07270 (G3T50_07240) ctsP 1401239..1401847 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  G3T50_RS07275 (G3T50_07245) ctsD 1401840..1403252 (-) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  G3T50_RS07280 (G3T50_07250) ctsR 1403230..1403541 (-) 312 WP_002880445.1 hypothetical protein Machinery gene
  G3T50_RS07285 (G3T50_07255) nifJ 1403565..1407125 (-) 3561 WP_044260331.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  G3T50_RS07290 (G3T50_07260) - 1407218..1407859 (-) 642 WP_052782179.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52983.48 Da        Isoelectric Point: 6.6156

>NTDB_id=422874 G3T50_RS07275 WP_044260333.1 1401840..1403252(-) (ctsD) [Campylobacter jejuni strain ZS007]
MIRLILINILCCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQANNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=422874 G3T50_RS07275 WP_044260333.1 1401840..1403252(-) (ctsD) [Campylobacter jejuni strain ZS007]
ATGATAAGATTAATATTAATTAACATTCTTTGTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTCAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGCAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.149

100

0.991

Multiple sequence alignment