Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | IFJ77_RS06675 | Genome accession | NZ_CP061780 |
| Coordinates | 1400432..1400857 (+) | Length | 141 a.a. |
| NCBI ID | WP_003094721.1 | Uniprot ID | G3XD43 |
| Organism | Pseudomonas aeruginosa strain ZBX-P11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1395432..1405857
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IFJ77_RS06660 (IFJ77_06660) | pilX | 1395996..1396583 (+) | 588 | WP_003094700.1 | type 4a pilus minor pilin PilX | - |
| IFJ77_RS06665 (IFJ77_06665) | pilY1 | 1396595..1400086 (+) | 3492 | WP_021264113.1 | type 4a pilus biogenesis protein PilY1 | - |
| IFJ77_RS06670 (IFJ77_06670) | pilY2 | 1400088..1400435 (+) | 348 | WP_021264112.1 | type 4a fimbrial biogenesis protein PilY2 | - |
| IFJ77_RS06675 (IFJ77_06675) | comF | 1400432..1400857 (+) | 426 | WP_003094721.1 | type 4a pilus minor pilin PilE | Machinery gene |
| IFJ77_RS06680 (IFJ77_06680) | ispH | 1400904..1401848 (-) | 945 | WP_003094724.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| IFJ77_RS06685 (IFJ77_06685) | fkpB | 1401934..1402374 (-) | 441 | WP_003094726.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| IFJ77_RS06690 (IFJ77_06690) | lspA | 1402367..1402876 (-) | 510 | WP_003094728.1 | signal peptidase II | - |
| IFJ77_RS06695 (IFJ77_06695) | ileS | 1402869..1405700 (-) | 2832 | WP_003094730.1 | isoleucine--tRNA ligase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15279.30 Da Isoelectric Point: 10.0198
>NTDB_id=422875 IFJ77_RS06675 WP_003094721.1 1400432..1400857(+) (comF) [Pseudomonas aeruginosa strain ZBX-P11]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR
Nucleotide
Download Length: 426 bp
>NTDB_id=422875 IFJ77_RS06675 WP_003094721.1 1400432..1400857(+) (comF) [Pseudomonas aeruginosa strain ZBX-P11]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baylyi ADP1 |
42.188 |
90.78 |
0.383 |