Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   G3T50_RS03355 Genome accession   NZ_CP048771
Coordinates   619841..620614 (+) Length   257 a.a.
NCBI ID   WP_167842727.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS007     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 614841..625614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T50_RS03340 (G3T50_03305) - 615690..617624 (-) 1935 WP_167842726.1 ribonuclease R family protein -
  G3T50_RS03345 (G3T50_03310) ilvC 617743..618765 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  G3T50_RS03350 (G3T50_03315) - 618769..619851 (+) 1083 WP_126207842.1 divergent polysaccharide deacetylase family protein -
  G3T50_RS03355 (G3T50_03320) dprA 619841..620614 (+) 774 WP_167842727.1 DNA-processing protein DprA Machinery gene
  G3T50_RS03360 (G3T50_03325) ruvX 620611..620994 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  G3T50_RS03365 (G3T50_03330) - 621023..621862 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  G3T50_RS03370 (G3T50_03335) msrA 622038..622535 (-) 498 WP_070316425.1 peptide-methionine (S)-S-oxide reductase MsrA -
  G3T50_RS03375 (G3T50_03340) ppa 622577..623095 (-) 519 WP_002871349.1 inorganic diphosphatase -
  G3T50_RS03380 (G3T50_03345) adk 623105..623683 (-) 579 WP_052794065.1 adenylate kinase -
  G3T50_RS03385 (G3T50_03350) aspS 623680..625431 (-) 1752 WP_167842728.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28730.46 Da        Isoelectric Point: 7.6510

>NTDB_id=422857 G3T50_RS03355 WP_167842727.1 619841..620614(+) (dprA) [Campylobacter jejuni strain ZS007]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRTSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLEFCKKGVSVDETLKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=422857 G3T50_RS03355 WP_167842727.1 619841..620614(+) (dprA) [Campylobacter jejuni strain ZS007]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTACGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATACAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGACTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

48.75

93.385

0.455

Multiple sequence alignment