Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   G3T50_RS03170 Genome accession   NZ_CP048771
Coordinates   579097..579747 (-) Length   216 a.a.
NCBI ID   WP_167842719.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS007     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 574097..584747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T50_RS03135 (G3T50_03100) - 574475..575479 (+) 1005 WP_167842999.1 hypothetical protein -
  G3T50_RS03140 (G3T50_03105) tlyA 575476..576237 (+) 762 WP_002872582.1 TlyA family RNA methyltransferase -
  G3T50_RS03145 (G3T50_03110) ribF 576203..577057 (+) 855 WP_002854793.1 bifunctional riboflavin kinase/FAD synthetase -
  G3T50_RS03150 (G3T50_03115) cmoA 577044..577754 (+) 711 WP_167842718.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  G3T50_RS03155 (G3T50_03120) - 577744..577965 (-) 222 WP_002859102.1 EexN family lipoprotein -
  G3T50_RS03160 (G3T50_03125) - 577962..578396 (-) 435 WP_052781974.1 EexN family lipoprotein -
  G3T50_RS03165 (G3T50_03130) - 578454..579086 (-) 633 WP_052781975.1 trimeric intracellular cation channel family protein -
  G3T50_RS03170 (G3T50_03135) CJE0566 579097..579747 (-) 651 WP_167842719.1 DNA/RNA non-specific endonuclease Regulator
  G3T50_RS03175 (G3T50_03140) nth 579744..580370 (-) 627 WP_002852225.1 endonuclease III -
  G3T50_RS03180 (G3T50_03145) peb4 580451..581272 (+) 822 WP_044261247.1 peptidylprolyl isomerase PEB4 -
  G3T50_RS03185 (G3T50_03150) fbaA 581272..582336 (+) 1065 WP_167842720.1 class II fructose-bisphosphate aldolase -
  G3T50_RS03190 (G3T50_03155) - 582431..583873 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25443.06 Da        Isoelectric Point: 9.5529

>NTDB_id=422856 G3T50_RS03170 WP_167842719.1 579097..579747(-) (CJE0566) [Campylobacter jejuni strain ZS007]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=422856 G3T50_RS03170 WP_167842719.1 579097..579747(-) (CJE0566) [Campylobacter jejuni strain ZS007]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTGGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTGGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCTAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.543

91.204

0.634

Multiple sequence alignment