Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   G3R55_RS06955 Genome accession   NZ_CP048769
Coordinates   1357948..1359129 (-) Length   393 a.a.
NCBI ID   WP_032584551.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB020     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1352948..1364129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R55_RS06925 (G3R55_06925) - 1353492..1353833 (+) 342 WP_002784057.1 hypothetical protein -
  G3R55_RS06930 (G3R55_06930) flgM 1353896..1354093 (+) 198 WP_002872343.1 flagellar biosynthesis anti-sigma factor FlgM -
  G3R55_RS06935 (G3R55_06935) - 1354136..1354570 (+) 435 WP_002779263.1 flagellar protein FlgN -
  G3R55_RS06940 (G3R55_06940) flgK 1354580..1356406 (+) 1827 WP_002867248.1 flagellar hook-associated protein FlgK -
  G3R55_RS06945 (G3R55_06945) - 1356423..1357187 (+) 765 WP_002851318.1 TIGR02757 family protein -
  G3R55_RS06950 (G3R55_06950) - 1357191..1357955 (+) 765 WP_002860344.1 TSUP family transporter -
  G3R55_RS06955 (G3R55_06955) ctsF 1357948..1359129 (-) 1182 WP_032584551.1 type II secretion system F family protein Machinery gene
  G3R55_RS06960 (G3R55_06960) ctsE 1359126..1360685 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  G3R55_RS06965 (G3R55_06965) ctsX 1360675..1361262 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  G3R55_RS06970 (G3R55_06970) ctsP 1361266..1361874 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  G3R55_RS06975 (G3R55_06975) ctsD 1361867..1363279 (-) 1413 WP_002880444.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  G3R55_RS06980 (G3R55_06980) ctsR 1363257..1363568 (-) 312 WP_002880445.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45744.32 Da        Isoelectric Point: 9.2580

>NTDB_id=422844 G3R55_RS06955 WP_032584551.1 1357948..1359129(-) (ctsF) [Campylobacter jejuni strain ZJB020]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHAMLEIYNFLDDYGIFCIFLFVIFNVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFINSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=422844 G3R55_RS06955 WP_032584551.1 1357948..1359129(-) (ctsF) [Campylobacter jejuni strain ZJB020]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAGGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGGTTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGTGAGTTTGCCTTTTATCACGCATGCAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTAATGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAAATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.214

99.746

0.98

Multiple sequence alignment