Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IFJ78_RS30610 Genome accession   NZ_CP061779
Coordinates   6586154..6586879 (-) Length   241 a.a.
NCBI ID   WP_003121789.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ZBX-P12     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6581154..6591879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFJ78_RS30585 (IFJ78_30590) - 6581626..6582141 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  IFJ78_RS30590 (IFJ78_30595) rarD 6582831..6583727 (-) 897 WP_003121788.1 EamA family transporter RarD -
  IFJ78_RS30595 (IFJ78_30600) - 6583930..6584904 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  IFJ78_RS30600 (IFJ78_30605) - 6584966..6585724 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  IFJ78_RS30605 (IFJ78_30610) - 6585792..6586112 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  IFJ78_RS30610 (IFJ78_30615) comF 6586154..6586879 (-) 726 WP_003121789.1 ComF family protein Machinery gene
  IFJ78_RS30615 (IFJ78_30620) - 6587018..6587311 (-) 294 WP_003084806.1 hypothetical protein -
  IFJ78_RS30620 (IFJ78_30625) - 6587365..6588291 (-) 927 WP_003121790.1 LysR family transcriptional regulator -
  IFJ78_RS30625 (IFJ78_30630) - 6588409..6589167 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  IFJ78_RS30630 (IFJ78_30635) - 6589244..6589492 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  IFJ78_RS30635 (IFJ78_30640) - 6589503..6590879 (+) 1377 WP_003121791.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  IFJ78_RS30640 (IFJ78_30645) - 6590881..6591759 (+) 879 WP_003103323.1 allophanate hydrolase subunit 1 -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27078.56 Da        Isoelectric Point: 11.2212

>NTDB_id=422845 IFJ78_RS30610 WP_003121789.1 6586154..6586879(-) (comF) [Pseudomonas aeruginosa strain ZBX-P12]
MSFPLRPLTRWLLPPPACLLCAARSDQPARPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPSYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=422845 IFJ78_RS30610 WP_003121789.1 6586154..6586879(-) (comF) [Pseudomonas aeruginosa strain ZBX-P12]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGGCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGTCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.017

100

0.382
  comFC Legionella pneumophila str. Paris

37.826

95.436

0.361

Multiple sequence alignment