Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   G3R55_RS06410 Genome accession   NZ_CP048769
Coordinates   1241400..1242368 (+) Length   322 a.a.
NCBI ID   WP_167861779.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB020     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1236400..1247368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R55_RS06385 (G3R55_06385) cdsA 1237310..1238035 (-) 726 WP_002867314.1 phosphatidate cytidylyltransferase -
  G3R55_RS06390 (G3R55_06390) - 1238044..1238382 (-) 339 WP_002852397.1 hypothetical protein -
  G3R55_RS06395 (G3R55_06395) - 1238384..1239691 (-) 1308 WP_002914001.1 NFACT family protein -
  G3R55_RS06400 (G3R55_06400) mobA 1239753..1240328 (+) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  G3R55_RS06405 (G3R55_06405) pldA 1240325..1241314 (+) 990 WP_002867311.1 phospholipase A -
  G3R55_RS06410 (G3R55_06410) ceuB 1241400..1242368 (+) 969 WP_167861779.1 ABC transporter permease Machinery gene
  G3R55_RS06415 (G3R55_06415) ceuC 1242361..1243299 (+) 939 WP_057096249.1 iron chelate uptake ABC transporter family permease subunit -
  G3R55_RS06420 (G3R55_06420) ceuD 1243296..1244051 (+) 756 WP_002871403.1 ABC transporter ATP-binding protein -
  G3R55_RS06425 (G3R55_06425) ceuB 1244064..1245056 (+) 993 WP_167861780.1 enterochelin ABC transporter substrate-binding protein CeuB -
  G3R55_RS06435 (G3R55_06435) - 1245282..1245836 (-) 555 WP_002884169.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35495.48 Da        Isoelectric Point: 9.6678

>NTDB_id=422841 G3R55_RS06410 WP_167861779.1 1241400..1242368(+) (ceuB) [Campylobacter jejuni strain ZJB020]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFIQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=422841 G3R55_RS06410 WP_167861779.1 1241400..1242368(+) (ceuB) [Campylobacter jejuni strain ZJB020]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCATC
TTTTTTCATTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGACTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTCATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTATTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.447

100

0.984

Multiple sequence alignment